| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1217 |
|---|
| Symbol | aspS |
|---|
| ID | 8357333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1456395 |
|---|
| End bp | 1458143 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644963373 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | YP_003120916 |
|---|
| Protein GI | 256420263 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0173] Aspartyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000000515713 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTACAGAA CGCACACTTG CGGCGAACTA CGACTCGAGC ATCAGGGCAC ACAGGTATCG
TTGTCTGGCT GGATTCAGAC AATCAGGAAA TTCGGAAGTA TCACATTTGT CGACCTGCGT
GACCGTTATG GTATTACACA GCTGCTGTTC GGAGAGTCTT TCAATGATCA GCTGGACGCA
CAGCCGCTGG GCCGTGAGTT CGTTATACAG GCAAAAGGTA CTGTAACTGA GCGTTCTAAT
AAAAACCCAA ATATTCCTAC GGGTGATATT GAAATCACGA TTAGTGAGTT TACTATATTA
AATGCAGCTA AAACGCCTCC TTTCACTGTA CAGGATGATA CGGATGGTGG AGATGAGCTG
CGTATGAAAT ACCGTTACCT TGACCTGCGC CGTAACATCG TAAAGCAGAA CCTTGAACTG
CGTTACCGTG TAAACAGATC TGCGCGTAAC TATCTGGACA GCAGAGGTTT CATGGATATT
GAAACCCCTT TCCTGATTAA GTCTACACCA GAAGGTGCAC GTGACTTCGT GGTACCAAGC
CGTATGAACC CTAATGAGTT CTATGCGTTG CCACAGTCTC CGCAGACCTT CAAGCAGCTG
CTGATGGTGA GTGGTTATGA CAGATATTAC CAGATTGTAA AATGTTTCCG TGACGAGGAT
TTACGTGCTG ACCGTCAGCC GGAGTTCACA CAGATCGACT GTGAAATGAG CTTTGTTGAC
CAGGAAGATA TCCTGAATAC CTTTGAGAAC ATGATGAAAC ATATCTTCAT GGAAATCAAG
GGTATCAGTT TTGAGGATGC TTTCCCGCGT ATGACCTGGG ATGATGCAAT GGAGTTCTAC
GGTAATGACA AACCGGATAT CCGTTTCGAC ATGAAGCTGG TGAACATGAA CGATACCGCT
AAAGGCGCCA ACTTCAAAGT ATTTGACGAT GCTGAACTGG TGGTAGCGAT CTGTGCAAAA
GGTTGTGCTG AGTACACCCG TAAGCAGCTG GATGAACTGA CTGAGTGGGT AAAACGTCCT
CAGATCGGCA TGAGTGGTCT GATTTATGCG AGATATAATG CAGATGGAAC AATAAAAAGC
TCTGTCGATA AGTTCTTTGA TGAAGAGAAA TTGAAGGGCT GGGCGGCAAA ATGTCAGGCA
GAACCAGGTG ACCTGATCCT GGTGCTGGCG GGTAAAGAGG AACGCACCCG CAAGGCAATG
AGTGAGTTAC GCCTGGAAAT GGGCGAACGT CTGGGACTGA GAGACAAGAA TGTATTTAAG
CCACTGTGGG TGATCGATTT CCCGCTGTTT GAATATGCTG AAGAGGAAAA CCGCTGGGTA
GCCCGTCACC ATCCGTTTAC ATCTCCTAAA CCGGAGCATA TCGAATGGAT GAATGACCTG
TCCAAATATG CAGACATCAA GGCAAATGCA TATGATATCG TGCTGAACGG TACAGAAGTG
GGCGGTGGCT CCATCCGAAT ATTCCAGCGT GACCTGCAGG AAAAAATGTT TGCAGCGCTC
GGTATGAGCC CTGAGGAGGC AAACCATAAA TTCGGCTTCC TGCTGGGAGC ATTTGAATAT
GGTGCACCGC CACACGGAGG TATTGCCTTC GGCTTTGACC GCCTGTGCTC GCTGCTGGGT
GGAAGTGAAA CAATACGAGA CTTTATAGCA TTCCCTAAGA ATAATTCCGG CCGTGATGTG
ATGCTGGACG CGCCTAGCGC AATTGATCAG GCTCAGCTGA ATGAGCTGAA GATCAGCCTG
GTGAAATAG
|
|---|
| Protein sequence | MYRTHTCGEL RLEHQGTQVS LSGWIQTIRK FGSITFVDLR DRYGITQLLF GESFNDQLDA
QPLGREFVIQ AKGTVTERSN KNPNIPTGDI EITISEFTIL NAAKTPPFTV QDDTDGGDEL
RMKYRYLDLR RNIVKQNLEL RYRVNRSARN YLDSRGFMDI ETPFLIKSTP EGARDFVVPS
RMNPNEFYAL PQSPQTFKQL LMVSGYDRYY QIVKCFRDED LRADRQPEFT QIDCEMSFVD
QEDILNTFEN MMKHIFMEIK GISFEDAFPR MTWDDAMEFY GNDKPDIRFD MKLVNMNDTA
KGANFKVFDD AELVVAICAK GCAEYTRKQL DELTEWVKRP QIGMSGLIYA RYNADGTIKS
SVDKFFDEEK LKGWAAKCQA EPGDLILVLA GKEERTRKAM SELRLEMGER LGLRDKNVFK
PLWVIDFPLF EYAEEENRWV ARHHPFTSPK PEHIEWMNDL SKYADIKANA YDIVLNGTEV
GGGSIRIFQR DLQEKMFAAL GMSPEEANHK FGFLLGAFEY GAPPHGGIAF GFDRLCSLLG
GSETIRDFIA FPKNNSGRDV MLDAPSAIDQ AQLNELKISL VK
|
|---|
| |