Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_1202 |
Symbol | |
ID | 8357318 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 1430767 |
End bp | 1431510 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644963358 |
Product | pseudouridine synthase |
Protein accession | YP_003120901 |
Protein GI | 256420248 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.90311 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0231079 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCATTA ACGACATCAT CATAAAAGAA ACGGCAGACT TTGTTATTCT GAACAAACCT GCAGGTATGC TGACCATTCC GGACAGGCAT GATAACCAGC TGGATTCCCT CCAGGGATTG CTGAAAAAGC ATTACGGTGA AATCTTCACG GTACACCGCC TGGATAAAGA CACCAGTGGC GTGATCCTGT TTGCCAAAAA TGAGGTAGCC CACAAATATT ATTCGCAGCT GTTCGAAGGC CGTAATGTGA AGAAATTCTA TAAAGGCCTG GTAAACGGAC AATTACACCC GGAAACCGGC AGCGTGGATG AAGCCATTAT GGAGCATCCG ACCATCAAAG GCAGAATGGT GACCAACAGA AAGGGTAAAA ACGCCCAGAC TGACTATCAG GTATTAGAAG CATTTGGCCT CTACAGCCTG GTGCAATTAC AGATCCATAC AGGCCGTACC CACCAGATTC GCGTACATAT GAAGCATCTG GGCCATCCGA TCGCCGTAGA CGAGCTATAT GGTACTGCTG CGCCGGTTTA TCTGTCTGCT ATCAAGAAGA ACTATAAACT GGGTAAAAGA GTAGAGGAAG AACGTCCGCT GCTGAGCCGA CTAGGACTGC ACGCGTGGCA GTTGCAATTC AAAGATCAGC AGGGAGAAGA AAACGTGATT GAAGCCCCGC TGCCAAAAGA TATTCAGGCA GTTGTAACGC AGCTGCGTAA AAACAGCGGC AGAAGCACAG AGCTGGTTTT ATAA
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Protein sequence | MRINDIIIKE TADFVILNKP AGMLTIPDRH DNQLDSLQGL LKKHYGEIFT VHRLDKDTSG VILFAKNEVA HKYYSQLFEG RNVKKFYKGL VNGQLHPETG SVDEAIMEHP TIKGRMVTNR KGKNAQTDYQ VLEAFGLYSL VQLQIHTGRT HQIRVHMKHL GHPIAVDELY GTAAPVYLSA IKKNYKLGKR VEEERPLLSR LGLHAWQLQF KDQQGEENVI EAPLPKDIQA VVTQLRKNSG RSTELVL
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