| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1192 |
|---|
| Symbol | |
|---|
| ID | 8357308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1419348 |
|---|
| End bp | 1420055 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644963348 |
|---|
| Product | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase |
|---|
| Protein accession | YP_003120891 |
|---|
| Protein GI | 256420238 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0313] Predicted methyltransferases |
|---|
| TIGRFAM ID | [TIGR00096] probable S-adenosylmethionine-dependent methyltransferase, YraL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.697941 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAAC CTGGTAAGGT ATACCTGATA CCCACTGTAC TCAGTGCAGA CACGCTGCAT
ACCATTCCTG CGTATGTGAC GCCGGTGGTA CAACAGATCA GCGTATTCTT TGTGGAGAAT
GAGCGTACAG CCAGAAGATA TTTAAAGGCG CTTGATAAAA GCATCAACAT CGATGCCCTG
CAATTATTAC TGATGTCTGA ACATCAGCCT CCTGATACCG CCCTGGCAAA ACAGCTACTG
CTTTCCGGTA AGGATATCGG TGTGATCAGT GAAGCGGGCT GTCCGGCTAT TGCAGATCCG
GGACATCTAG TTGTACAGGT GGCACATGCC ATAGAAGCCC CTGTCATTCC TATGGTTGGC
CCTAACTCTA TGCTACTCGC ACTGATGGCT TCCGGTATGA ATGGACAGAA CTTTCAGTTT
GTCGGCTATC TGCCGGTAAA ACCACCCGAA AGAATCAAAG CGATCCGTGA CCTGGAAATG
CAGTCACAGA AGAAACAACA AACACAGCTC TTTATAGAAA CACCTTACCG TAATAACCAG
TTGCTCAAAG ACTTACTGGA TAACTGTAAA GACAACACAC AGATATGTGT AGCGGCTGAT
ATTACAGGGC CGGAAGAGTT TATCCGGACG AAGACCGTGA AGGCGTGGAA ACAGGTATTA
CCGGAACTGC ATAAGAAACC AGCGATATTT CTACTGCTGG CGCAGTAA
|
|---|
| Protein sequence | MAQPGKVYLI PTVLSADTLH TIPAYVTPVV QQISVFFVEN ERTARRYLKA LDKSINIDAL
QLLLMSEHQP PDTALAKQLL LSGKDIGVIS EAGCPAIADP GHLVVQVAHA IEAPVIPMVG
PNSMLLALMA SGMNGQNFQF VGYLPVKPPE RIKAIRDLEM QSQKKQQTQL FIETPYRNNQ
LLKDLLDNCK DNTQICVAAD ITGPEEFIRT KTVKAWKQVL PELHKKPAIF LLLAQ
|
|---|
| |