| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1186 |
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| Symbol | |
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| ID | 8357302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 1411415 |
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| End bp | 1413253 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644963342 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_003120885 |
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| Protein GI | 256420232 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAGAA CCCACAATAA CGATAAAACC TTGCCCGTAA TAAACAGTCT GCCGGCTTTC
TGCAGACGCG TAAGCCGGTT GTCTTTGTTA CTGGCAGGTT TTTGTTGTGT GTTGGGGACT
GCCTGCCGCA CCGGCAAATC CGTTGCCTCC CGTCAGTCTG CCTCCCGGAC AGTGCACGTC
ATCCGGGATT CATCTCTCCT GCAACAAAGG GCTGACAGTC TTTTCTTCTC TGCGGAACGC
TCGAAATTGC TAGGCGACTA CCGTACTGCC ATCACCCAGT TTTCTGACTA CCTGCGCCTG
AAAAGGAACA ATCCTACTGC CTATTACGAG CTGGCCCGCC TCTTCATCGA GGTGCGGAAT
CCGCAATATG CACTGGGCTT TGCCCGCAGG GCAGCCAATA TGGACACGAC TAATAAGTGG
TTCCAGATAA CGCTGGCAGA TGCATTCGGT GTGAATGCCC AGTTTGACAG TTCTGCGGCT
GTATATGACC GCCTCTCCAG GAGGTATCCT GAAAATGAAG AGTATATCTA CAATAAGGGT
ATGTTCCTGT CCAAGGCAGA TAAAACAGAA GCGGCACTGA TCGTATTTGA TACGCTTGAA
GCAAGGACAG GGCTGGTAGA AGAACTGGCC TTTCAGAAGC AGCGCTTATA CCTGAAACTA
AACCGGATAG ATGACGCGGC TGCTGAAGTG CAGAAGCTCA TTAACCAGAA CCCGGAAGAG
GTCAGGTATT ACCTGGTTCT CGGAGATATC TACAATTCCA ATGATCGCGT GGAAGAGGCG
ACAGCCATTT ACAAAGAAGT GCTGGACCGC GACTCCACCA ATCCGAGGGC ATTAATAGCG
TTGTCCGGCT ATGCTAAAAA GGATGGTGAT ACCGTACTGT ACTGGAAGTA CCTGACCCGT
GCATTCACCA ATCCTGATTA CAGCATTGAC GAGAAAGTAG CCTATGTATA TCCTTACCTG
CAAATGCAGA AACTGGATAC CAGCAAACTG AAAGAAGGAT TACAGCTGTC ACAGCTGGTG
ATCAATGCAC ATCCTGAAGA GGCGAAAGCC TATGCATTAC AGGCTGATAT GTATTCTCAG
GCCGGTATGC TGGATAGTGC ACTGATTGAT TATAACAAAG CAGTTACACT GGATTCCACA
CGTTTTACCG TATGGTACCA GTTAATGTGG ATCTACTCCC GTAAAGAGGA ATCCGCTAAC
CTCCTGAAAG TGAGCTCAGT AGTATCTGAG CGTTTTCCAA AGGAATTTAT GGGTCATTAT
TTCAAAGGGG TGGCTAACTT TTTGCTGCAA AATTATCCTG CATCTATAGA TGCGCTGAAT
ATGGCTGTGC AGACGGCAAA CAACGGTGAT AAAGGCACCC GGGCAGATGT TTACTCTTTG
TTGGGAGATG CCTATCATGC TACCGGTCAG CATCAGTTAT CAGATAGCTG TTACGACAGG
TCGCTGGCAA TCAGACCCAA TGATGCGCTT GTGCTGAACA ATTTCAGTTA CTATCTCTCA
CTTAGAGGAG AGCAGCTGAG CAAAGCAGAA AGTATGTCTA AGCGCTCACT GGAACTGGAA
CCTGAAAGCG CCAATTTTAT GGATACCTAC GCCTGGATCC TGTTTCGTAT GGCCCGTTAT
GAACAGGCCA GAGAATGGAT GGAAAAAGCT TTACAGCAAG AAGATGCACG TGATAATCCA
GGTATGCTGG AACACTATGG GGATATCCTG TTTAATCTCC ACCAGGTAGA TAAGGCGCTT
GAATATTGGC AGCTGGCCAA ACAAAAGGGC GCTAATTCGG TAGGGTTAGC CCGCAAAATT
GCAGAAAAAC GGTATATACT TGCAACTGAA AGGGAATAG
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| Protein sequence | MFRTHNNDKT LPVINSLPAF CRRVSRLSLL LAGFCCVLGT ACRTGKSVAS RQSASRTVHV
IRDSSLLQQR ADSLFFSAER SKLLGDYRTA ITQFSDYLRL KRNNPTAYYE LARLFIEVRN
PQYALGFARR AANMDTTNKW FQITLADAFG VNAQFDSSAA VYDRLSRRYP ENEEYIYNKG
MFLSKADKTE AALIVFDTLE ARTGLVEELA FQKQRLYLKL NRIDDAAAEV QKLINQNPEE
VRYYLVLGDI YNSNDRVEEA TAIYKEVLDR DSTNPRALIA LSGYAKKDGD TVLYWKYLTR
AFTNPDYSID EKVAYVYPYL QMQKLDTSKL KEGLQLSQLV INAHPEEAKA YALQADMYSQ
AGMLDSALID YNKAVTLDST RFTVWYQLMW IYSRKEESAN LLKVSSVVSE RFPKEFMGHY
FKGVANFLLQ NYPASIDALN MAVQTANNGD KGTRADVYSL LGDAYHATGQ HQLSDSCYDR
SLAIRPNDAL VLNNFSYYLS LRGEQLSKAE SMSKRSLELE PESANFMDTY AWILFRMARY
EQAREWMEKA LQQEDARDNP GMLEHYGDIL FNLHQVDKAL EYWQLAKQKG ANSVGLARKI
AEKRYILATE RE
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