Gene Cpin_1163 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1163 
Symbol 
ID8357279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1387103 
End bp1388014 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content50% 
IMG OID644963319 
ProductABC transporter related 
Protein accessionYP_003120862 
Protein GI256420209 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID[TIGR03522] gliding motility-associated ABC transporter ATP-binding subunit GldA 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAATCA CAGTAACACA GTTAAGCAAG GTATACGAAG AGCAGCGGGC AGTCAATGAT 
ATTTCCTTCT CGCTGAATAA AGGCGAGGTA GTGGGTTTTC TGGGTCCTAA CGGGGCCGGC
AAGAGCACTA CCATGAAGAT GATCACCGGC TACCTGCCTC CGAGTGGCGG TAATGCCAGC
GTATGCGGCT ATGATGTAGT GACGCATCCT ATGGAAGTCA GACAGCGTAT CGGCTACCTG
CCGGAAGCCA ATTCTCTCTA TAAAGACATG TACGTCCGGG AGTTCCTCAG CTTTATCGCT
GAAGTACATA AACTGGGCAG TAATAAGGAA AAACGCATTT CCGAAGTGAT CGCTATGACC
GGTTTACAGC CGGAAAGCAA GAAAAAGATC GGGCAGTTGT CCAAAGGGTA CCAGCAGCGT
GTTGGTTTGG CCCAGGCACT GATACATGAT CCGGAAGTGC TGATCCTGGA CGAGCCAACC
TCCGGTTTCG ATCCCAACCA GCTGGTAGAT GTGCGCGATC TGATCAGGGA ACTGGGTAAA
ACCAAGACCA TCATGCTCAG CACACACATC ATGCAGGAAG TAGAAGCCAT GTGCAGCCGG
GTTATCATCA TCAATAAGGG TAACATTATT GCGGACGATT CCCTCCAGAA CCTGCAACAA
GGCGACCAGC AAAATGGTTA TATCCAGGTA TCTTTCGGCG CACCGCTTCC TGCAGAGGCG
GAGCTGTTGC AGATACCGGG CGTAACGCGG GTAAAACAGC AGGACGGCGG TACATGGCAG
TTATTTGCCG CTAATCTGGA AGATGTACGC AAAAACCTGC TACAATTTGC TTTGATAAGT
AACCGGAACA TCCTTTCTTT GCAGAGCAAT TCACAAAGCC TGGAGTCAAT CTTCAGGGAA
TTGACAAAGT AG
 
Protein sequence
MSITVTQLSK VYEEQRAVND ISFSLNKGEV VGFLGPNGAG KSTTMKMITG YLPPSGGNAS 
VCGYDVVTHP MEVRQRIGYL PEANSLYKDM YVREFLSFIA EVHKLGSNKE KRISEVIAMT
GLQPESKKKI GQLSKGYQQR VGLAQALIHD PEVLILDEPT SGFDPNQLVD VRDLIRELGK
TKTIMLSTHI MQEVEAMCSR VIIINKGNII ADDSLQNLQQ GDQQNGYIQV SFGAPLPAEA
ELLQIPGVTR VKQQDGGTWQ LFAANLEDVR KNLLQFALIS NRNILSLQSN SQSLESIFRE
LTK