Gene Cpin_1135 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_1135 
Symbol 
ID8357251 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1354552 
End bp1355214 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content45% 
IMG OID644963291 
ProductYceI family protein 
Protein accessionYP_003120834 
Protein GI256420181 
COG category[S] Function unknown 
COG ID[COG2353] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.387208 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATATA TACTTTCTAT CATGCTGATC ACCTTGCTGG CTGCCTGTGA ACAGGCGCCG 
AAAGCTGACA AGGCGACCAT TACAGAGGCT CACCCGGTAA AAGAGGGTAA AGGAAGCCCA
TACCTGGTTG ACACCGCTAA CAGCGAATTA CGCTGGATAG GCACCAAGCC TACCGGCAAA
CATACCGGCC GGTTTACACT GCAGGAAGGA AAGTTATTGG TAAAAGACAC GGCCATCACC
GGTGGTAACA TCATTATCCG TATGAACTCC CTGGAAAATA TCGACCTGTC CAAATCAGAT
ACTTCTCTGA AACGTAAACT GGAAGATGAG TTAAAAGGCC CGCTGTTCTT CGATGTGGTA
AATTTCCCGG TAGCTACGTT TGAGATCACC AATGTCAGCG ACTTTACGCC TTCTGTGGGT
AATGAGGTAT TGATGAAGAA CGCAAATTAT ACGGTACAGG GTAATCTGAC GATCAAGAAT
ATCACTAAGA ATATCTCCTT CCCTGCTATT ATCAGGTTTG AAAATGGCAC TATCACAGCA
ATGGCCAATT TCAATATCGA CAGAACGCTG TGGGGAATGA CCTACAGAGC TGATAAATCC
ATGCAGGACA AACTGATCAA CTCAGCGGTA AATCTTGAAT TCAGAATCAC TGCTGCCAAA
TAA
 
Protein sequence
MKYILSIMLI TLLAACEQAP KADKATITEA HPVKEGKGSP YLVDTANSEL RWIGTKPTGK 
HTGRFTLQEG KLLVKDTAIT GGNIIIRMNS LENIDLSKSD TSLKRKLEDE LKGPLFFDVV
NFPVATFEIT NVSDFTPSVG NEVLMKNANY TVQGNLTIKN ITKNISFPAI IRFENGTITA
MANFNIDRTL WGMTYRADKS MQDKLINSAV NLEFRITAAK