| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1075 |
|---|
| Symbol | |
|---|
| ID | 8357189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1288347 |
|---|
| End bp | 1288835 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644963229 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003120774 |
|---|
| Protein GI | 256420121 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTT CTACATTCCA AGCTCATTTA CTGGAAAACG CAGATTTCCT GAAGCCAGTT
GCCATGGCAC TGACCAAGGA CCCGGAAGCT GCCAAAGACC TTTACCAGGA GACACTTTAC
AAAGCACTGA AAAACAAGGA CAAATATCTC GAAGGCAGTA ACATCCGTGC CTGGTTGTAT
ACCATTATGC GCAACCTTTT TATCAATGAA TACAGACGCG CCGCCAAACA CTCCACTACC
GCCGAGATCA CGCCCAACAT TACCAACAAC ACCCTGGCCG AAGTAAATGC AGAAAACATG
CTCCGTACAA AAGAAATAAA GGGAACCCTT TACAAGCTCC CTTTATCTTT TAAGAAACCA
TTGCTGTTGT ACTGCGATGG CTTCAAATAT CATGAAATTG CGGAAATGCT ACATGAACCG
ATGGGTACGA TCAAAAGCCG TATTCACCTG GCCCGTAAAC TGCTTTGTAC AACTATGCCA
CGCCATTAA
|
|---|
| Protein sequence | MSFSTFQAHL LENADFLKPV AMALTKDPEA AKDLYQETLY KALKNKDKYL EGSNIRAWLY
TIMRNLFINE YRRAAKHSTT AEITPNITNN TLAEVNAENM LRTKEIKGTL YKLPLSFKKP
LLLYCDGFKY HEIAEMLHEP MGTIKSRIHL ARKLLCTTMP RH
|
|---|
| |