| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1066 |
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| Symbol | |
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| ID | 8357180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 1272751 |
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| End bp | 1274880 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644963220 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_003120765 |
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| Protein GI | 256420112 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATACGA AAGAAATAGA AATCACTTTG CTTCAATTAG CAAAGGACCT GTTAGGAAAA
TTGCAGCAAA AAGAAACTAT CCAGGACCTG GATAGTACGC TGGAGAACCT GCGCCGGGTT
ATTATTTATA ATGACTGGCG TTACTATGTG CAAAGTGACC CCGTTTTAAG TGATTACGAA
TATGATCAGT TGTTTGCCTG GTTGAAAGAA CTGGAAACCG CTAATCCTGA CAAAGTCAGC
GCTGACTCCC CCACGCAGCG CGTTGCACTG GGTATTTCAA AGAATTTCCC CACAGTACAG
CACCTGGTAC CGATGCTGAG TCTGGAAAAC TCCTACAATG CAGATGATCT TAATGACTGG
GACCGCAAGG CACGTGAGAT CAGCGGACTG ACAGACATCG AGTATTGTAT TGAACCCAAG
TTTGACGGCG CCAGTATTTC CCTCATTTAT GAGAATGATA AGCTGACCCG TGGCGCCACC
CGTGGCGATG GCGTATCCGG AGAAGATATT ACCGCAAATA TCAGACAGAT ACGTTCTATT
CCGCTGAGTG CACACTTCGC AGCCCATGGT ATTCAATCCA TAGAGATAAG AGGAGAAGTG
TTGATCAATA AGAATACGTT CAAAGCATAT AATGACCAGC GTGCAGCTGA TAACCTGCCT
CCGCTGGCCA ATCCGCGTAA TGCGGCTTCA GGTTCACTCC GGATGGTAGA TCCGCGTGAA
GTAGCCAAAC GCGGACTGGA AGCATTCCTC TACCACATGA GCTATCACGT GATGGATGAT
GGAAAAACCG AACCACAAGA GATCAAAACA CACAGCAATA CCCTGCAGCT GCTTGCCAGC
CTTGGCTTCC GCTCTCCTGC AAAGGAAATG AAAGTGGTAA AAGGCATCCA GGCAGTCATT
GATTATGTAC TGGAATTTGA AAAGGAAAGA GACAATCTGC CTTATGAAAT AGATGGTATG
GTGATCAAGG TGAATGATTA TGCCTTGCAG GACAAACTGG GTATGACCAC ACACCATCCC
CGCTGGGCAA TGGCGTACAA GTTCAAAGCC AGACAGGCGA CCAGTAAATT ACGCAGGGTT
GAATTCCAGG TAGGACGTAC CGGTTCCGTT ACGCCTGTTG CGAAAATCGA TCCTGTACCT
ATAGGCGGTG TTACGGTTGG TTCCATTTCA TTGTTCAATG AAGATGTCGT AAAAGAAAAG
GACCTGAAAA TAGGCGATAC CGTACTGGTA GAAAGAGCGG GCGACGTGAT TCCTTACATC
GTGAAATCAC TTGCAGATCT GCGCGATGGT ACTGAGGAAG AGATTAAATT TCCTACGGAA
TGTCCGGTGT GTAATGAACC ACTGTTCAAA CCAGAGGGTG AAAGCGTATG GCGCTGTATC
AACCTGATGT GCGAGGCACA GGTAGTGGAG AGAATGATTC ATTTCGTCAG CAAAGACGCG
ATGGATATCC GTAGTCTGGG TGAGAGCAAC GTTCGTAAAT TCTATGGCCT GGGACTGATG
AAAGATATTC CAGGCATCTA TAAAATAGAC TTCGCCCAAC TGGAAAAGCT GGAAGGCTTT
GGTAAGAAAT CGTTGACCAA CCTGCAAAGC GCCATAGAGC AGTCAAAAAC GCAACCTTTA
CATAGACTGA TCTTCGGTCT GGGTATTCGT TATGTCGGTG AAACTACGGC CAAGACACTC
GCAAATGCCG TTAATCACCT GCTGGATCTT AAAGACTGGA CAGAAGAGCA GTTACTCGCA
CTGGAAGATA TCGGACCAAA AGTAGCCGGT AGTATCAACC AGTTCTTCCA CCTGGATGAC
AGTATTCATA TGCTGCAGGA ATTAGAAGCG TTGGGGCTGA ATCTGAAAAG CACTAAAGCA
GATCATCCAG GCGGCGGTAA TCTTGACGGA CAAACCTTCC TTTTTACCGG TACGCTGAAC
AAGCTGAAAC GCAATGATGC AGAAGCGATG GTAGAGCAAC AGGGAGGTAA AATATTAAGC
GGCGTAAGCA GCAAACTGAA CTTCCTGATT GTAGGTGATG ATGCCGGCAG TAAACTGGAG
AAAGCGAAAA AAATCAACAC GATCAGGATA CTGAGTGAAG ATGAATTCCT GAACCTGATT
CAATCACAGG CACCGGTTAC GGAATCATAA
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| Protein sequence | MYTKEIEITL LQLAKDLLGK LQQKETIQDL DSTLENLRRV IIYNDWRYYV QSDPVLSDYE
YDQLFAWLKE LETANPDKVS ADSPTQRVAL GISKNFPTVQ HLVPMLSLEN SYNADDLNDW
DRKAREISGL TDIEYCIEPK FDGASISLIY ENDKLTRGAT RGDGVSGEDI TANIRQIRSI
PLSAHFAAHG IQSIEIRGEV LINKNTFKAY NDQRAADNLP PLANPRNAAS GSLRMVDPRE
VAKRGLEAFL YHMSYHVMDD GKTEPQEIKT HSNTLQLLAS LGFRSPAKEM KVVKGIQAVI
DYVLEFEKER DNLPYEIDGM VIKVNDYALQ DKLGMTTHHP RWAMAYKFKA RQATSKLRRV
EFQVGRTGSV TPVAKIDPVP IGGVTVGSIS LFNEDVVKEK DLKIGDTVLV ERAGDVIPYI
VKSLADLRDG TEEEIKFPTE CPVCNEPLFK PEGESVWRCI NLMCEAQVVE RMIHFVSKDA
MDIRSLGESN VRKFYGLGLM KDIPGIYKID FAQLEKLEGF GKKSLTNLQS AIEQSKTQPL
HRLIFGLGIR YVGETTAKTL ANAVNHLLDL KDWTEEQLLA LEDIGPKVAG SINQFFHLDD
SIHMLQELEA LGLNLKSTKA DHPGGGNLDG QTFLFTGTLN KLKRNDAEAM VEQQGGKILS
GVSSKLNFLI VGDDAGSKLE KAKKINTIRI LSEDEFLNLI QSQAPVTES
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