| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1059 |
|---|
| Symbol | |
|---|
| ID | 8357173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 1266700 |
|---|
| End bp | 1268088 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644963213 |
|---|
| Product | oxidoreductase domain protein |
|---|
| Protein accession | YP_003120758 |
|---|
| Protein GI | 256420105 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAAA ATGCTAATAA CAACTCTCGC AGGGGATTTA TCACCAAAGT GGCGAAAGGA
GTAGTGGGCG CCTCTTTATT GCCCAACATC ATCACAGCAG CCGACAGAAA ACGTAACCTC
GAATCACTGT CGCGTGTAAA CGAAAAGTAT AGTGCCAATG ACCAGATCCA GATCGCACTG
ATCGGAGCCG GTGGCATGGG TACTGCGGAT ACCAATACCG CTATTACCGT ACCCGGCGCT
AAACTGATAG CCGCCTGTGA CCTCTACGAT GGTCGTCTTG CAGATGCAAA AAAGAAATGG
GGTAACGACA TCTTTACTAC CCGCGATTAT CGTGAGATCC TTGAGCGTAA AGATGTAGAT
GCGGTTATTA TCGCCACACC CGATTTCTGG CACAAAGACA TCTCCGTGGC TGCGATGAAT
AAAGGCAAAT CTGTCTATTG CGAAAAACCC ATGGTACATG ACATTTCTGA AGGCCCTGCC
GTAGTAGAGG CACAACAGAA AAACAGCAAA GTGGTATACC AGGTAGGAAG CCAGGGGATG
AGTTCTCTGG GGAATGAAAA AGCCAGACAA TTGCTGAAAG ACGGCGCTAT CGGAAAACTC
AATTATGCGG AAGGATTCTG GGCACGTATG TCTCCCTTCG GCGCCTGGCA GTACCCTATT
CCGGCGGACG CTTCTACGAA AACCGTCGAC TGGACCACTT ATCTGAAAAA TGCGCCTAAA
AGAGATTTCG ACCCCTTACG CTTTTTCCGT TGGCGTAATT ACAGGGATTA TGGTACCGGC
GTATCCGGCG ATCTGTTTGT ACACCTGTTC TCCAGTCTGC ATTTTGTAAC CGGTTCTATC
GGACCAGAAA AAGTAATGGC TACCGGTGGT CTCCGTTACT GGAAAGATGG CCGTGAAGTA
CCGGATGTAA TGCTCGGCAT GTTTGACTAT CCTGAAACGG AAGTACATCC TGCATTTAAC
CTTTCCCTGC GCGTGAACTT CGTGGATGGT ACCGGTGGTA CCAACTATCT GCGGATGGTA
GGCAGCGAAG GTTCTATGAC GGTAGAATGG GATAAGGTAA CCCTGTATCG CAACAAAACA
TATGCAGCTA CAGACGATCC TTTATTGCAG GGCAAAAAGG ATGTCGATCA TGGTAAACAG
TACGTTTATG ACCGTAAGGA AATGCTGCCG CCGGATAAGC TGGAATATGT AGCGGAAGAA
GGCTATAAAG GCGCTCATTT TGATCACTTC TACAATCTGT TCAATGCGAT GCGCACAGGT
GGTAAAGTAA GTGAAGACGC CCTGTTTGGC TATCGGGCAG CCGCACCTGC ATTACTGTGT
AACGATAGCT ACTTTAACAA CCGTATTATT CAATGGGATC CTAAAGCCCT GAAATCGATA
AACAAATAA
|
|---|
| Protein sequence | MPENANNNSR RGFITKVAKG VVGASLLPNI ITAADRKRNL ESLSRVNEKY SANDQIQIAL
IGAGGMGTAD TNTAITVPGA KLIAACDLYD GRLADAKKKW GNDIFTTRDY REILERKDVD
AVIIATPDFW HKDISVAAMN KGKSVYCEKP MVHDISEGPA VVEAQQKNSK VVYQVGSQGM
SSLGNEKARQ LLKDGAIGKL NYAEGFWARM SPFGAWQYPI PADASTKTVD WTTYLKNAPK
RDFDPLRFFR WRNYRDYGTG VSGDLFVHLF SSLHFVTGSI GPEKVMATGG LRYWKDGREV
PDVMLGMFDY PETEVHPAFN LSLRVNFVDG TGGTNYLRMV GSEGSMTVEW DKVTLYRNKT
YAATDDPLLQ GKKDVDHGKQ YVYDRKEMLP PDKLEYVAEE GYKGAHFDHF YNLFNAMRTG
GKVSEDALFG YRAAAPALLC NDSYFNNRII QWDPKALKSI NK
|
|---|
| |