| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_1052 |
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| Symbol | |
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| ID | 8357166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 1259652 |
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| End bp | 1262396 |
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| Gene Length | 2745 bp |
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| Protein Length | 914 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644963206 |
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| Product | surface antigen variable number repeat protein |
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| Protein accession | YP_003120751 |
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| Protein GI | 256420098 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000329593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAT TATTTCCTAA GAGCCTACTG GCCATAGTAT TATGTTGCAG TGCCGGCATT
CGTGTGTCCG CCCAGATCAG GGACACTAGT GTTACGCCGG TTCCAACACC TGACCAGCAA
GCGGCGGGAT TGAATTTATC AGGTCCGTTA CAGGCACAGC CTTACGAAAT TGCTGACATT
ACCATTGTAG GGACGCAATA CCTGGATAAA TCTCTGCTGA TTTCCCTGTC AGGCCTCAAT
GTCGGTGATA AAGTGGTTTA TCCCGGCGGT GACCAGTTCG CAAAGGCCAT CCAGAGTCTC
TGGGGCCAGC GTTTGTTTGC CAACGTTGCT ATTTATGTTA CCAAAATAGA AGACGGGAAG
ATTTGGCTGG AAATAGAACT CCAGGAACGC CCTCGTCTGA ATAACTTCGT TTTCAGAGGT
GTTAAAAAGT CTGAAACAGA AGAACTGATA AAAAAAGCCG GCCTGCGTAA AGGATCCGTT
GTAACCGAGA GCATGAAACA GAATGCAATC GGCGTGATCT CTAAACACTA TGGCGATAAA
GGCTTCCGCA ATGCTACTGT TAACATTACC GAAAGAACAG ATACCTCCCA GGTAAATGCT
TCCGACCTGG TAATTACCGT AGTAAAAGGT GGTAAAGCAA AAGTGAACGA TATCCAGATC
GTGGGTAACG ACAATATTGA CGATACAAGA GTGAAGAAGA AAATGAAAGG TACCAAAGAG
CGTACCCGCT TCACTTTATA TCCGGATATC GAGTCGGTAT ATGAAGATTC AACCGAACTG
CAGGAAAACT ACTGGAAAAC CTTCGGTTTC CTGTATCCTT CCCGCACTAT GGAACAACTG
GATCCGTATT TCCGTTTCAA ATTATTCTCT TCTGCCAAGT TCAATGAGAA CAAATACGCA
GAAGACAAAG AGAAAGTAAT CGCTTATTAT AACACACAGG GTTACCGTGA CGCCGTTCTG
GTGAGAGATA CTACTTATCG TGCGCACAAT GGTGGTGTAA ACGTAGCCAT GCAGATCAGC
GAGGGTAAGA AATATTACTT CGGTAACATT ACCTGGAAAG GTAACAGCCG TTATAACGAC
TCCCTGCTGA CCCGTGTACT CGGTATCAGA AAAGGAGATA CCTACAACCA GGAACTGCTG
CAGAAACGCT TATTGTCTTC TGAAGGTGGC GACATCGGTG GTATGTACAT GGACTTCGGT
TACCTGTTCT TCCGTGCTGA CCCTGTAGAG GTGGCGATCC ATGGCGATAC CATCGACTAT
GAGATCCGTA TCTCTGAAGG TCCGCAGGCA ACCATCAAAG AAGTACGTAT TGCCGGTAAC
GAAAAAACCA ACGAACACGT AATCCGTCGT GAGTTGCGTA CGCTGCCTGG TGAGAAATTC
AGCCGTACTG ACCTGATCCG TTCCAACCGC GAGATCGCGA ACCTCGGTTT CTTCAACCCT
GAGAAGATCG GTATGGACCC TATCCCGAAC ATCCAGGATG GTACCGTGGA TATCAACTAC
ACTGTAGAAG AGAAAGCGAA TGACCAGCTG GAATTATCTG CAGGATGGGG TGGTTACATC
GGTCTGACCG GTACTTTGGG TGTGACCTTC AACAACTTCT CCCTGCGTAA CATTTTAAGA
AAGGAAACAT GGGATCCATT ACCAAGTGGT GACGGCCAGA AATTATCTGT GCGTGTATCA
TCCAACGGTA AAGCCTATCG CTCCTATAAC TTCTCATTTA CCGAGCCATG GTTAGGTGGT
AAAAAGCGTA ACCAGTTCTC TGTCAGCTTC TACAGCAGCT ACCAGAACCC GAACGCTTAT
TCTGCTTATA TATATGGTAG CACCCTGTCT AACAATGCTT ACTTCAAAGT ATTGGGTGGT
TCCGTATCCC TCGGTAAACA GCTGAAATGG CCTGATGACT TCTTCACGCT GATCTACTCC
CTGAACTATC AGCAGTATAA ACTGAAGAAC TATAACTATT TCAATATTCC TGGTTTCTCC
AGCGGTACTT CCAATAACGT CAACATTAAA CTGACCCTCG CCCGTTCATC TGTGAACCAG
CAGATCTATC CGAGCAGTGG TTCTAACTTC CTGTTGTCCG GACAGTTCAC GCCTCCTTAC
TCCATATTTA ATCCTAACAG GGATTACAAA CTGGAGTCTA TTCAGGATCA GTTTAACCTG
ATTGAATACC AGAAATATCG TTTCAACGCG GAGTGGTACG TTCCATTGAG CAGACCTAAA
GGTTCTGATA ACAAAGTGTT CGTACTGAAA GTAGCCGCTA AATTCGGTTA CATCGGCCGC
TACAACAACC GCACAACATT GTCTCCATTT GGTCGTTTTG AGCTGGGTGG CGATGGTCTG
AGTAACTTCG CGATCTATGA CCGTGATATC ATCTCCCAGA GAGGTTATCC GGTATACTAT
ACCTCGGATC CTAGGATGAA CTCAGAAACC GGACAACCAA CAGGTTATGA AGGTTTCACC
GTGTTCAACA AATATGTGAT GGAGTTACGT TATCCGTTCA GTCTGAACCC AAGCTCTACC
ATCTTTGGTC TGGCGTTCGT GGAGGCAGCC AATGGTTACC GCGATGTAAG AGACTTCAAT
CCGTTCAGAT TACGTCGTTC AGCAGGTCTC GGTATGCGTT TCTACCTGCC GATGTTTGGT
CTGCTTGGAT TTGACTATGG TATCGGTTTC GACCGTCTGC AGTCCGGCAA TGGTCTGAAA
GATGCTGCTA AGTTCACCTT CATGCTGGGC TTCGAACCGG AATAA
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| Protein sequence | MKKLFPKSLL AIVLCCSAGI RVSAQIRDTS VTPVPTPDQQ AAGLNLSGPL QAQPYEIADI
TIVGTQYLDK SLLISLSGLN VGDKVVYPGG DQFAKAIQSL WGQRLFANVA IYVTKIEDGK
IWLEIELQER PRLNNFVFRG VKKSETEELI KKAGLRKGSV VTESMKQNAI GVISKHYGDK
GFRNATVNIT ERTDTSQVNA SDLVITVVKG GKAKVNDIQI VGNDNIDDTR VKKKMKGTKE
RTRFTLYPDI ESVYEDSTEL QENYWKTFGF LYPSRTMEQL DPYFRFKLFS SAKFNENKYA
EDKEKVIAYY NTQGYRDAVL VRDTTYRAHN GGVNVAMQIS EGKKYYFGNI TWKGNSRYND
SLLTRVLGIR KGDTYNQELL QKRLLSSEGG DIGGMYMDFG YLFFRADPVE VAIHGDTIDY
EIRISEGPQA TIKEVRIAGN EKTNEHVIRR ELRTLPGEKF SRTDLIRSNR EIANLGFFNP
EKIGMDPIPN IQDGTVDINY TVEEKANDQL ELSAGWGGYI GLTGTLGVTF NNFSLRNILR
KETWDPLPSG DGQKLSVRVS SNGKAYRSYN FSFTEPWLGG KKRNQFSVSF YSSYQNPNAY
SAYIYGSTLS NNAYFKVLGG SVSLGKQLKW PDDFFTLIYS LNYQQYKLKN YNYFNIPGFS
SGTSNNVNIK LTLARSSVNQ QIYPSSGSNF LLSGQFTPPY SIFNPNRDYK LESIQDQFNL
IEYQKYRFNA EWYVPLSRPK GSDNKVFVLK VAAKFGYIGR YNNRTTLSPF GRFELGGDGL
SNFAIYDRDI ISQRGYPVYY TSDPRMNSET GQPTGYEGFT VFNKYVMELR YPFSLNPSST
IFGLAFVEAA NGYRDVRDFN PFRLRRSAGL GMRFYLPMFG LLGFDYGIGF DRLQSGNGLK
DAAKFTFMLG FEPE
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