| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0998 |
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| Symbol | |
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| ID | 8357112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 1198371 |
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| End bp | 1200956 |
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| Gene Length | 2586 bp |
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| Protein Length | 861 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644963152 |
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| Product | DNA ligase D |
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| Protein accession | YP_003120697 |
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| Protein GI | 256420044 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGCT TAAAAACATA TGATGAAAAA CGGGATTTCA AACAGACTGC GGAACCTAAA
GGTGCGAAGA AAAAGAGTGG TGGAAAGCAA CACATTTTTG TCATACAAAG GCATCATGCA
TCACGTCTGC ATTATGACTT CCGTTTGGAG GTAGATGGAG TGCTGAAAAG CTGGGCGGTG
CCAAAGGGAC CTTCTATGAA TCCTGCGGAT AAGAGACTGG CCATGCAGGT GGAAGATCAC
CCATATGACT ATAAAGATTT TGAAGGTGTG ATCCCGGAAG GGAATTACGG CGCTGGTTAT
GTCTATGTCT GGGATAAAGG CAATTACGAA TTACTGCGGG AGGATGGTAG CAGCTTTGAT
AAAGAGGCAA ATAAAGAGAT CAGAGAAGGG GATCTGAAAA TACGCCTGAA AGGGCGGAAA
GTGAAAGGGG AGTTTGCATT GGTGAAGATG AAGAATTCGG AGGATAATGC CTGGCTGTTA
CTGAAACACA AAGATGACTA TGCCGTAAAG GACGCTTATA ATAGTGAAGA TTTCACGCCG
CAGCGCGTAA AGGACCGGGG CGTGAAGGAA AAAGAAAAAA TGAAAGGCGC AGGTAAAAAA
AAAGCAGGTC TCACAAAAGT GAAAACAGCG CCTCAAACAG AAAAAACAGT AAAAAAAAAT
AAACGGCAGC AGGAGCTTTT TACACCGATG ATGGCCACCC TGGTAGACGC TCCTTTCAGC
CGGGAAGGCT GGTTGTTTGA AACGAAATGG GATGGTTACC GGGCTATAGC AGATGTAAGG
AAAGGCAAAG TGGAACTATA CTCCAGGAAT CATCTCTCCT TCAATAAGGA TTACGCCCCT
GTTGTAAAAG CTTTGGAAAG TCTGCAGCAT GACGCTGTGC TGGACGGAGA AATCGTTATC
CTGAAAAAAG ACGGTACTTC CGATTTCCAG TCGTTACAGA ATTATAAGAA TGATCCTTCT
GGCAATCTGG TGTATGTGGT GTTTGATCTG CTTGAGTTGG ATGGAGAAGA CCTGAAAGCT
ATGCCGTTGA TCCAGCGAAA AGAATTGTTG AAAACGGTGG TGAAGCAGTT GAAGCGTAAG
GACGTCATTT ATTCGGATCA TGTTATGGAC AATAGTGACG CATTGTATAA ACAGGCGAAG
GAGAAAGGCT GGGAAGGAAT CATTGCAAAG GAAGCAGATA GTCTGTATGC AGAAGGGAAA
CGTGCGATGG CCTGGCTGAA GATAAAGATC ATCGATGAAC AGGAAGCGAT TATCTGTGGA
TATACTGATC CTAAGGGGAG CAGAAAGAAG ATCGGTTCCC TGGTACTGGG TGTATATGAT
GATAAGCAGC AATTGCGATA TGTGGGGAAC TGTGGCGGTG GATTAAACGG GGCATTGATC
AACGAACTAT ATGAGAAGAT GCAACCACTG CGGCAAAAAA CATCGCCTTT TGATAAAAAG
ATCAGGACAA ATACACCGGT TACCTGGGTA AAACCGCAGC TGGTATGCCA GGTGAAGTTC
TCTTCGTGGA CAAGTGACAA GCAGCTACGG CAGCCGGTAT TCCTTGGATT GAGGAAAGAC
AAACCGGCGG AGGAGGTGCA TCAGGAAACT GCAAAACCTA CAAAGATGGC TACTAAAAAA
GCGGCAGCAA CCGCTGCTCC GGTGAAAGCT ACCCCTGAGA AAGAGCGGGT AGTGACACTC
AACAGTAAAA AGGTACCGCT GACCAATCAG CAGAAATTAT ACTGGCCCGA TGAAAAGGTG
ACAAAAGGTG ACCTGATCGA TTATTATATG GATATGGCGG ATTATGTGCT GCCTTATCTG
AAAGACAGAC CACTCAGCCT GCATCGTTTC CCGAATGGGA TCAAAGACGC AGGTTTTTAT
CAGAAAGATG TAGATACGGA ATCCGCTCCT GACTGGGTGA AAACAGTCAC CTTACATGCG
GCTTCTGCAT CCCGGGATGT GGATTACCTG GTTTGTAACA ATGCTGCTAC ACTGGTCTAT
ATGGCCAACC TTGGCTGTAT TGAAATGAAT CCCTGGTTAT CGCGTGTGAA AAATCTGGAT
CATCCGGATT ACATCGTACT GGACCTGGAT CCGGAGAATA TTGCTTTTAA GTACGTGGTG
GAAACCGCAT TGGCGATAAA GGAACTATTG GATAAGGTAG GTGTAAAGTC TTTTTGTAAG
ACGTCCGGGG CTTCGGGATT GCATATTTAT GTGCCTACCG GCGGAAAATA TAATTATGAA
ACCTGCCGGT TATTTGCGGA ATATGTGGCC AAGCAGGTGC AACAGGAATT ACCGAAGATT
ACCAATGTGA TCCGTACGAA GTCTAAACGT AATAAGAAGG TTTATATCGA CTATATGCAG
AATAGTCGCG GGCAGACTGT TGCTTCACCT TATTCCGTAA GGCCGAAACC GGGAGCTACC
GTGTCTGCTC CGCTGGACTG GAAGGAATTG AATGACGATC TTGCTATCAG TAATTTTACG
ATGGAGAATA TGCGGGATAG AATAAGAGCC GTGGGGGATT TGTGGAAAGA TATCGATAAG
ACGAAAAATG ACCTGCGCAA GGCGATAGAA AAAGTGGAGT CGATAGCAGC AGCGCATGTG
GAATAA
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| Protein sequence | MSSLKTYDEK RDFKQTAEPK GAKKKSGGKQ HIFVIQRHHA SRLHYDFRLE VDGVLKSWAV
PKGPSMNPAD KRLAMQVEDH PYDYKDFEGV IPEGNYGAGY VYVWDKGNYE LLREDGSSFD
KEANKEIREG DLKIRLKGRK VKGEFALVKM KNSEDNAWLL LKHKDDYAVK DAYNSEDFTP
QRVKDRGVKE KEKMKGAGKK KAGLTKVKTA PQTEKTVKKN KRQQELFTPM MATLVDAPFS
REGWLFETKW DGYRAIADVR KGKVELYSRN HLSFNKDYAP VVKALESLQH DAVLDGEIVI
LKKDGTSDFQ SLQNYKNDPS GNLVYVVFDL LELDGEDLKA MPLIQRKELL KTVVKQLKRK
DVIYSDHVMD NSDALYKQAK EKGWEGIIAK EADSLYAEGK RAMAWLKIKI IDEQEAIICG
YTDPKGSRKK IGSLVLGVYD DKQQLRYVGN CGGGLNGALI NELYEKMQPL RQKTSPFDKK
IRTNTPVTWV KPQLVCQVKF SSWTSDKQLR QPVFLGLRKD KPAEEVHQET AKPTKMATKK
AAATAAPVKA TPEKERVVTL NSKKVPLTNQ QKLYWPDEKV TKGDLIDYYM DMADYVLPYL
KDRPLSLHRF PNGIKDAGFY QKDVDTESAP DWVKTVTLHA ASASRDVDYL VCNNAATLVY
MANLGCIEMN PWLSRVKNLD HPDYIVLDLD PENIAFKYVV ETALAIKELL DKVGVKSFCK
TSGASGLHIY VPTGGKYNYE TCRLFAEYVA KQVQQELPKI TNVIRTKSKR NKKVYIDYMQ
NSRGQTVASP YSVRPKPGAT VSAPLDWKEL NDDLAISNFT MENMRDRIRA VGDLWKDIDK
TKNDLRKAIE KVESIAAAHV E
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