| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0972 |
|---|
| Symbol | |
|---|
| ID | 8357086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1168166 |
|---|
| End bp | 1168714 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644963126 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003120671 |
|---|
| Protein GI | 256420018 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACCG ATGTGAATGA CGACTTGCTG TTACAAGAAC TAAAATCCGG GGATACAAAG
GCGTATAAGA CTATGTACTT GCGTTTCGAA AAGCTACTGT TGTTCGAAGC CAGCCGGCTT
TTAGGTGATG TAGAAGAAGC AAAAGACGTA ATACAGGAGT TCTTTATAGA CTTCTTCGAA
AAAAAGCGAT ACAATAATAT ACACACCAAC CTCAAGGGAT ATCTATATAT CTCCATACGG
TACAATTGTA TGCTTATCCT AAAACGACAG AAGAGTCTGC AAAAATCACA ACAGGAATAC
TATTCTTCAC AGGAAGAGCC AACCGTACAC CTGGAAGAAG AAAACGAGCC AACTGTCCGC
GACTATATCG ACAATAAAGT GAATGAACTA TTGAAATTTA TGCCAGCACA AAGAAGCAAA
GCATTCCAAC TCTATGTCCT TCAGGGCATG AAGAGAAAAG AAGTAGCCAG CATAATGGGT
TTAAGCGATA ATACTGTCAA GACGCACCTC GCTACCGCAA TTAAAACATT GCGTGAAAAA
TTGTCATAA
|
|---|
| Protein sequence | MHTDVNDDLL LQELKSGDTK AYKTMYLRFE KLLLFEASRL LGDVEEAKDV IQEFFIDFFE
KKRYNNIHTN LKGYLYISIR YNCMLILKRQ KSLQKSQQEY YSSQEEPTVH LEEENEPTVR
DYIDNKVNEL LKFMPAQRSK AFQLYVLQGM KRKEVASIMG LSDNTVKTHL ATAIKTLREK
LS
|
|---|
| |