Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0954 |
Symbol | |
ID | 8357068 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 1138310 |
End bp | 1139557 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644963108 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_003120653 |
Protein GI | 256420000 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAGAA AAATAGAAAA GAAGTACTGG TCTAAAAAGA GAATCGCCCT TATCAGCGGA GGCGCTGTAG TAGCGATGTT ACTTCTGTAC AATCTCATAT TTGCCGATCA TCGTTCCAAG TTGAACGTAG AGAAAGATAA GATCACTATT TCTACCGTCA GCAAAGGCAC CTTTGATCAA TATATAGCAG TTACCGCTGT TGTGTTGCCT CTTAAAACAA TTCGCCTCGA TGCCATCGTA GGCGGTTATG TCAGTCAGAA ATACCTGGAG GGGGGTAGCA TGGTTAAAAA GGGCGACAGC ATTCTGCGCC TGGAAAACCA GAACCTGATG ATGGACTTTG TAAATCATGA AACGGAAATC TACCGTCTGA TCAACGAACT CCAGAATACC CGCCAGACCC TGAAGCAGAA CCGTTTTACT ATGCAGCAGA CCGTGGCAAA CCTGGATTTT CAGATCGAAC AGGCCAAAGA CCTGTATGAT CGTACCAAAC AACTGGTAGA CGAGAAGATC GTTTCCCGGC AGGAGTTTAT AAAAAATAAG CTTGATTATG AGCGTCTTGT GAAACAGCGC CAGATAGAGG TAGAAAGCCA GCGCTTCCAG GAGGACAATG CCAAAATACA GATAGATCGC CTTGAGTCAA CTATTCTCCG TACGCAGCGT AACCTTCAGA TGATGAAGGA TAACCTGAGT AACCTGGTGT TGAGAGCGCC TATCGACGGA CAATTATCCT CTGTTGACGC CGAAGTAGGG GGAAGCATCA CTGCCGGTCA GAATATTGGT CAGATCGATG ACCTGGATGG CTTCAAGATG CGTGCGGAAG TGGACGAGCA TTATATCTCC AGGGTATTCC CGGGTTTGAA ATCCACTTTT GAGTTCAATA ACAAAACCTA TGTATTATCT ATCATCAAAG TATATCCTGA GGTGAAAAAC GGTCGTTTCA ATGTCGATAT GAAATTCGAA AAAGAAATGC CGGAAGGGAT CCGTCGCGGA CAATCGTCTC CTATCCGCCT GGAATTAGGT AAGTCCTCTT CCGCGCTGTT GCTGCCGGTA GGTGGTTTCT TCTCCGACAC CGGTGGTAAC TGGGTATATG TAGTGGATAA AGCTGGAAAC AGGGCCGTAA AACGGAACAT TTCCCTGGGA CAGAAAAACC CACAGTATTT TGAAATACTG GAAGGTTTGC AGGAGGGTGA ACAGGTCATT ACTTCTTCGT ATGAAAATTT CGGAGACAAA GAGGTTTTAG TATTTTAA
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Protein sequence | MDRKIEKKYW SKKRIALISG GAVVAMLLLY NLIFADHRSK LNVEKDKITI STVSKGTFDQ YIAVTAVVLP LKTIRLDAIV GGYVSQKYLE GGSMVKKGDS ILRLENQNLM MDFVNHETEI YRLINELQNT RQTLKQNRFT MQQTVANLDF QIEQAKDLYD RTKQLVDEKI VSRQEFIKNK LDYERLVKQR QIEVESQRFQ EDNAKIQIDR LESTILRTQR NLQMMKDNLS NLVLRAPIDG QLSSVDAEVG GSITAGQNIG QIDDLDGFKM RAEVDEHYIS RVFPGLKSTF EFNNKTYVLS IIKVYPEVKN GRFNVDMKFE KEMPEGIRRG QSSPIRLELG KSSSALLLPV GGFFSDTGGN WVYVVDKAGN RAVKRNISLG QKNPQYFEIL EGLQEGEQVI TSSYENFGDK EVLVF
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