| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0904 |
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| Symbol | |
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| ID | 8357018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 1077285 |
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| End bp | 1079225 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644963058 |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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| Protein accession | YP_003120603 |
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| Protein GI | 256419950 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTAT ATAGTAATTC ACTGACGGAG TATAAGAGGC TGGCCACTTT GGAAGTAAAG
GTCGGAGACC TGCTGATTGG AAATAATAAT CCGATACGTA TTCAGACCAT GACCACCACA
GATACCATGA ACACCCTCGG TACTGTGGAA CAGGCCATCC GCTGTATCGA AGCGGGCGCC
GAACTGGTAC GTATTACCGC TCCCAGCAAA AAGGAAGCGG AAAACCTGCT GCCGATTCGT
AATGAGCTGC GCAAAAGAGG TTATACCACT CCCCTGGTGG CTGATATCCA CTTTACCCCT
AATGCCGCTG AAATAGCGGC CCGCATCGTG GAGAAAGTGC GTATCAATCC CGGCAACTAC
GTTGATAAAA AGAAGTTCGA AACACTCACA TATACTGATG CCGAATACGA AGAGGAAATT
GACCGTATCC GCAAACAATT CACCCCACTG GTGAAAATAT GCCAGGAACA CGGCACCGCT
ATGCGTATCG GTACCAACCA CGGCTCCCTC AGCGACCGTA TCATGAGCCG CTATGGGGAT
ACGCCAATGG GAATGGTGGA AAGTGCGATG GAATTCCTCC GTATTGCGGA AGACCTCAAC
TACCGGAACA TCGTCCTGAG TATGAAATCC AGCAACCCGC AGGTAATGGT GCAGGCTTAC
CGCCTGCTCG TACATACCAT GCAGGACCAG CTGGGACATT GCTATCCGCT GCATCTGGGA
GTAACAGAAG CCGGCGACGG TGAAGACGGC CGTATCAAAT CCGCCGTAGG TATCGGTACT
TTACTGGAAG ACGGTATCGG CGACACCATC CGCGTATCCC TCACGGAAGA TCCGGAATTT
GAACTGCCTG TATGCCGCGA CCTGGTGAAA CGCTATACCT CCCGCGCCGA TCATACGCCT
ATCCCGGCAA TTGAAAACGT GCCTTATTCT CCTTTCGAAT ACAAACGCCG TGAAAGCATT
GCGGTAAATA ATATCGGTGG TAAACAGGTG CCTGTTGTTG TTGCTGATTG CAGTAGCACC
AGCGGTATCA CACCTGCACA CCTGCTGCCT GTTGGTTATA ATTATAATGC AGATACAGAT
AAATGGAATA TCGCAGATGC GGCGGCTGAT TATATCTTCT CCCGCGAACT GCTGTCTTTC
GCTTTACCAG GTACGCTGAA AGTAATTGTG CCACACGACA TCTGGAAAGA TGCGGAAGAC
AAGGAAAAAT ATATGCCGCT GTTCACCGCG GAAGAATACC TCCTTGCCAC AGACAAGTCT
GCGGTGATCA ACTTCATCGA TCATAATACC GGTGTGACCC TCCCGGAGGC ATTACTGTTG
CAGATGGCCA ATGATCATAC GATCGTTCTC TGTCTCCACT CCTCCAACGA GCACGCCATG
CCGGAAGTAA GACGCACTTT CGTGACCCTG CTGGACCGCC AGATCCAGCA ACCGGTAATC
CTGAAATGTT TTGCTGACGC CACCTCCTCT GATGAACACC TGATACACTA TGCGACCGAG
ACAGGCGCAT TACTGCTGGA CGGATTCGGT GATGGTACCT GGCTGGTAAG CGAAGCGACC
GGTGCACAAG CGCCCGGCCA TGCATTATTG AACAATATCG CCTTCGGTAT CTTACAGGCC
ACCAGAACCC GTATATCGAA GACTGAATAT ATTTCCTGCC CATCCTGCGG TCGTACACTG
TTTGACCTCC AGGAAACCAC TGCTAAGATC AGAGCTGTCA CCAACCACCT CAAAGGCGTG
AAGATCGCGA TCATGGGTTG TATCGTGAAC GGCCCCGGAG AAATGGCAGA TGCCGACTTC
GGATACGTCG GCAGCGGTGT AGGCAAGATC ACACTCTACC GTGGTAAGGA AGTCGTAAAA
CGAGGACTCA ATAGTGAAGT AGCCGTCGAT GAACTGATCT CTCTCATCAA GGAAAACGGA
ATGTGGGTAG AAACTAACTA A
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| Protein sequence | MQLYSNSLTE YKRLATLEVK VGDLLIGNNN PIRIQTMTTT DTMNTLGTVE QAIRCIEAGA
ELVRITAPSK KEAENLLPIR NELRKRGYTT PLVADIHFTP NAAEIAARIV EKVRINPGNY
VDKKKFETLT YTDAEYEEEI DRIRKQFTPL VKICQEHGTA MRIGTNHGSL SDRIMSRYGD
TPMGMVESAM EFLRIAEDLN YRNIVLSMKS SNPQVMVQAY RLLVHTMQDQ LGHCYPLHLG
VTEAGDGEDG RIKSAVGIGT LLEDGIGDTI RVSLTEDPEF ELPVCRDLVK RYTSRADHTP
IPAIENVPYS PFEYKRRESI AVNNIGGKQV PVVVADCSST SGITPAHLLP VGYNYNADTD
KWNIADAAAD YIFSRELLSF ALPGTLKVIV PHDIWKDAED KEKYMPLFTA EEYLLATDKS
AVINFIDHNT GVTLPEALLL QMANDHTIVL CLHSSNEHAM PEVRRTFVTL LDRQIQQPVI
LKCFADATSS DEHLIHYATE TGALLLDGFG DGTWLVSEAT GAQAPGHALL NNIAFGILQA
TRTRISKTEY ISCPSCGRTL FDLQETTAKI RAVTNHLKGV KIAIMGCIVN GPGEMADADF
GYVGSGVGKI TLYRGKEVVK RGLNSEVAVD ELISLIKENG MWVETN
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