| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0871 |
|---|
| Symbol | |
|---|
| ID | 8356985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 1043050 |
|---|
| End bp | 1043940 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644963025 |
|---|
| Product | SMP-30/Gluconolaconase/LRE domain protein |
|---|
| Protein accession | YP_003120570 |
|---|
| Protein GI | 256419917 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3386] Gluconolactonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGC ATATCTGTTT ATTGCTGGTG ATGACCGCAG GCTGTGCAGC GATGGCACAG
GATAAATCCA CGGCATTATA CCAGGCACAG GATCTGACAA AAGAAAACAT GTTCTCTGTC
AATATTGAAG GCCCCAACTT TGACAAAGCA GGCAACCTCT ATGTAGTCAA CTATCTGAAA
GATGGCACCA TCGGTAAGAT CAGCACGAAA GACGGTAGCG GCGAATTGTT TGTAACACTA
CCCGACAGCA GTATTGCCAA CAGCATCCAG TTCAACAGCA AAGGCAATAT GTACCTGCCC
GACTTCAAAG GGCATAATGT ACTTGAGGTA AATCCAAAGA CCCGGAAAGT AAGCGTGTAT
GTACATTCCG ATAAGATGTC TCAACCTAAC GACCTCTGTA TCAATAAAAA AGATCAGTTA
TTCGCATCCG ATCCTGACTG GAAAAACTCC GGTGGTCAGA TATGGCGTAT CGATAAAGGC
GGCAAAGCCG TACTGCTGGA AGCCAATATG GGTACTACCA ATGGTATTGA ACTGAGCCCC
GACGAAAAGA CCCTGTATGT CAATGAAAGC GTACAGCGTA AAGTATGGAA GTATGATGTA
GACAATAATG GCAACATCAG CAACAAGACC TTATTCGCCT CCTTCCCTGA TTTCGGCTTC
GATGGCATGA AATGCGACAA AGCCGGTAAC CTGTACATCG CCCGCTGGGG AAAAGGTACC
ATCGTCGTAC TGTCTCCCGA AGGGACAGAG ATCCGGGAAA TCCCGCTGAA AGGCAAACAT
TGCAGCAACC TGACCTTCGG TGGTAAGGAT GGAAAAACAG TGTATGTAAC CTTACAGGAC
AGGAAGTGTA TGGAGCAGTT TAATGTGGAA ATACCAGGCA AGAGATATTA G
|
|---|
| Protein sequence | MKQHICLLLV MTAGCAAMAQ DKSTALYQAQ DLTKENMFSV NIEGPNFDKA GNLYVVNYLK
DGTIGKISTK DGSGELFVTL PDSSIANSIQ FNSKGNMYLP DFKGHNVLEV NPKTRKVSVY
VHSDKMSQPN DLCINKKDQL FASDPDWKNS GGQIWRIDKG GKAVLLEANM GTTNGIELSP
DEKTLYVNES VQRKVWKYDV DNNGNISNKT LFASFPDFGF DGMKCDKAGN LYIARWGKGT
IVVLSPEGTE IREIPLKGKH CSNLTFGGKD GKTVYVTLQD RKCMEQFNVE IPGKRY
|
|---|
| |