Gene Cpin_0858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0858 
Symbol 
ID8356972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp1028848 
End bp1029963 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content45% 
IMG OID644963012 
ProductEndonuclease/exonuclease/phosphatase 
Protein accessionYP_003120557 
Protein GI256419904 
COG category[R] General function prediction only 
COG ID[COG3568] Metal-dependent hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGATTTC TGAGGTTATT CACAAAAGGA TTCTTTTTAA CGGCGAACAC CATTGTAGTG 
CTTCTGTTCA TAGTGGCCTG CCTGGCGCCG TATGTTTCAC CGGAACGTTG GTGGCCTATC
AGTTTCATTA CATTGCTCTT CCCGTTACTG CTGCTGGTAT TGGTGTTATT CTTTATCTGC
TGGCTGCTGT TCGATTTTAA ATATTGCCTG CTGCCAATGT TGCCGGTCGT AATAGGCTGG
AAATCTATTT CCGCTTTTGT CGCATTCAAT TACCCGACTT CCGGAAAACA GTTTGCCAAT
CCTGCGGGCA GTCTGACCAT CATGAGCTAC AACGTTGCTC AGTTCGGGCT TTACCGTGAG
AAAGACAGCA AATACAACAG GGAAGCGATG TTTGCGCTGA TAAAAAAGCA GGAACTGGAT
ATTGTTTGTC TGCAGGACTT TTATACTTCA GAAAAGAAAA ATGATTTCAA TAACCGGGAA
GATATCTCCC GGGAGATGAA ACTACCCTAC CGTTTCTTTT CCAGTGATTT TAACCGGGAT
GGTATGCAGC ACTGGGGATC TATTATCTAT TCCCGTTACC CGATTATCAA GTCTGACAAA
CTGAAAATGT CATATGGTCC GCGTAGTGAA AGTCTTATCT ATGCCGACAT TGTGAAGAAC
GGCGACACGA TCCGTATCAT CAATATGCAC CTGGCATCTT ACCGTTTCAA TGAAAGGGAC
TATCGTTCTA TCGAAAAGAT AAAAAAGCAG GAAGATACCG GTCTGGTGGC TACACGCAAT
ATTGTGCAGA AAATGCGCGA CGCGTATGTG GATCGCAGTA AACAGGCAGA TATTGTGTCA
GCATTTATCA GTACCTGTCC ATATCCCGTG ATCCTATGCG GAGACTTTAA TGATACGCCG
GCATCGTATA CTTATTTTAC CATCCGGGGC GACCTGCAGG ATGCTTTTCT CAGAAAGGGC
AGCGGTATCG GCCGGACTTA CGCCGGACTG GCCCCTACCC TCCGGATCGA TTACATCTTT
ACGGATAAAT CATTCAAAGT CAATTCATTC CGGAAAATCA ATTCTACCCT GTCCGATCAC
TATCCGGTGA TAGCCAATGT AAGTGCCAGA CGGTAA
 
Protein sequence
MRFLRLFTKG FFLTANTIVV LLFIVACLAP YVSPERWWPI SFITLLFPLL LLVLVLFFIC 
WLLFDFKYCL LPMLPVVIGW KSISAFVAFN YPTSGKQFAN PAGSLTIMSY NVAQFGLYRE
KDSKYNREAM FALIKKQELD IVCLQDFYTS EKKNDFNNRE DISREMKLPY RFFSSDFNRD
GMQHWGSIIY SRYPIIKSDK LKMSYGPRSE SLIYADIVKN GDTIRIINMH LASYRFNERD
YRSIEKIKKQ EDTGLVATRN IVQKMRDAYV DRSKQADIVS AFISTCPYPV ILCGDFNDTP
ASYTYFTIRG DLQDAFLRKG SGIGRTYAGL APTLRIDYIF TDKSFKVNSF RKINSTLSDH
YPVIANVSAR R