| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0813 |
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| Symbol | |
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| ID | 8356926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 975944 |
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| End bp | 977266 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644962966 |
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| Product | peptidase S13 D-Ala-D-Ala carboxypeptidase C |
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| Protein accession | YP_003120512 |
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| Protein GI | 256419859 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000256542 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATCAT TCAGGATTGT TTTATCAGCT TGTCTGTTAC TATCATTTAT TAAGCCGGTT
GCCGCCCAGT ACGGTCCGAT TAGAAAATGG GCGGAAGAAG AGTTGCTGAC AAGTGCGCCG
CTGAAACAGG CGCATACTGG TATCAGCATT TACGAACCTG CTACTGGTAA ATACTGGTAT
AACTATCAGG AAGATCATTA TTTCACACCA GCATCCAATA CTAAGATCTT TACCCTGTAT
ACCGGCTTAC GCCTGCTGGG TGATTCATTA CCAGCCTTGC GCTATTTCCG TACTGATTCT
GCTTTGTATG TGAAGGGAAT GGCAGATCCT GCGTTTCTGC ATCCGGATTA TAATGTGCAA
CCCGCCTGGC AGTTATTACA GCAGGCCAGT CAGCCGATTG TACTGGTACC GGCGGCGATA
GAAAATAAAC GTTTTGGGAG TGGCTGGGCA TGGAGTGATT ATGCCGACTA CTATCAACCT
GAATTAAACG AATGGCCGGT ATATGGTAAC GTCGCCCGGG TGCGTCATCA TGGTGATAGT
ACCCTTATAT GGCCCCGGAT GTTCAACGAT ACGGTACATT TTTCCGTTCA TCGGAATGAT
AAACTGGAGG AGTTGCTGAC GGAAAGAGAC GAGCGTATTA ACCGGTTCTC CGTAACATAC
AATGGTAATG ATAAAAGTGT GCAGGAAGGA GAGATCCCGT TTATTACGGG GGGAAGTGAT
GATCTGGTAT ACCGGTTACA GGACACTTTA CATAAACCAA TCACGATTGC TGCAGCAGGC
AACCGACCTG CGCCTGCCTC ATTCTCTTTG CTGAGAGGTA TTCCGGTGGA TACCCTGTTT
CAACCAATGA TGCATCGTAG TGATAACTTT TTTGCAGAAC AGACGCTCAT GATGTGTTCC
GCTTTATTGT GGGATACGAT CAGTACCGCA CGTACGATTG CATTTATGCA AAAGAGTTAC
CTGGCAAATC TGCCGGATAC GCCGAAGTGG GTAGATGGCT CCGGCTTATC CCGTTATAAC
CTTTTTACAC CAAGAGATTT TGTCAGTGTG TTGTCTGACA TGTATAAGAG CTATCCTTCA
CAACGATTAT ACGCCCTGTT TCCGACAGGC GGAAAAGGCA CACTGAAGAA CTATTATAAA
CAGCAGTTTG TGCATGCTAA GACAGGTACC TTGTCCGGAT GCGTCGCATT GAGCGGCTAC
CTGGTTACTA AAAAGAATAA GACCTTGGTA TTCAGTGTAT TGGTGAATAA CCATAACAAC
AGTGCTACCG CTGTAAGACG AACGGTAGAG CGTTTCCTCA CCCAGATATG GGAACAGTAC
TAA
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| Protein sequence | MRSFRIVLSA CLLLSFIKPV AAQYGPIRKW AEEELLTSAP LKQAHTGISI YEPATGKYWY
NYQEDHYFTP ASNTKIFTLY TGLRLLGDSL PALRYFRTDS ALYVKGMADP AFLHPDYNVQ
PAWQLLQQAS QPIVLVPAAI ENKRFGSGWA WSDYADYYQP ELNEWPVYGN VARVRHHGDS
TLIWPRMFND TVHFSVHRND KLEELLTERD ERINRFSVTY NGNDKSVQEG EIPFITGGSD
DLVYRLQDTL HKPITIAAAG NRPAPASFSL LRGIPVDTLF QPMMHRSDNF FAEQTLMMCS
ALLWDTISTA RTIAFMQKSY LANLPDTPKW VDGSGLSRYN LFTPRDFVSV LSDMYKSYPS
QRLYALFPTG GKGTLKNYYK QQFVHAKTGT LSGCVALSGY LVTKKNKTLV FSVLVNNHNN
SATAVRRTVE RFLTQIWEQY
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