Gene Cpin_0803 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0803 
Symbol 
ID8356916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp965707 
End bp966435 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content47% 
IMG OID644962956 
Product3-deoxy-D-manno- octulosonatecytidylyltransferase 
Protein accessionYP_003120502 
Protein GI256419849 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase 
TIGRFAM ID[TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAG TAGCCTTAAT TCCTGCCCGC TATGGCGCTA CCCGGTTTCC GGGTAAGCTG 
ATGGCAAAAC TGGGGGGCAA ATCTGTGATC CTGCGTACCT ATGAAAGCAC CGTTAACACC
GGTGTGTTTG ACGAGGTAAT GGTGGTTTGC GACAACGACA TTATTTACAA TGAAATTGTA
AGTAACGGTG GTAAAGCAAT CATGAGCAAA AAGGAACACG AATGCGGTAC CGATCGTATT
GCAGAAGCCA TTGAAGATCG TGCTGATGTG GATATCGTGG TGAATGTACA GGGTGACGAA
CCTTTTACCC AGAAAGAACC GTTGGAGAAA TTATTGCAGG TTTTTGAAGG AGAAGAGGGT
AAGAACGTGC AGGTGGCTTC ATTGATGCAG GTGCTGAAGG ATTGGAAATC TATCGAAGAT
CCTAACTATG TAAAAGTGGC CGTTGATAAG AAATCCAACG CCCTTTTCTT CTCCCGCTCG
GTGATCCCGT ATCCCCGTGA TAAAAACGTG GCGACCACTT ATTACGAACA TATCGGCATC
TACGCTTTCC GCAGGCAAAC GCTGATGGAT TTTACCAAAA TGCCGGTAAG TCCGCTGGAA
GCTGCTGAAA AGATCGAATG TCTGCGTTAC CTGGAGAATG GCATTTCCAT GAAAATGGTG
GTGACTGAAT ACATGGGCGT GGAGATCGAT ACGCCGGAAG ACCTGGTGAA GGCAGAAAAA
TTACTGTAA
 
Protein sequence
MKKVALIPAR YGATRFPGKL MAKLGGKSVI LRTYESTVNT GVFDEVMVVC DNDIIYNEIV 
SNGGKAIMSK KEHECGTDRI AEAIEDRADV DIVVNVQGDE PFTQKEPLEK LLQVFEGEEG
KNVQVASLMQ VLKDWKSIED PNYVKVAVDK KSNALFFSRS VIPYPRDKNV ATTYYEHIGI
YAFRRQTLMD FTKMPVSPLE AAEKIECLRY LENGISMKMV VTEYMGVEID TPEDLVKAEK
LL