Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0797 |
Symbol | |
ID | 8356910 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 961819 |
End bp | 962586 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644962950 |
Product | glycoside hydrolase family 25 |
Protein accession | YP_003120496 |
Protein GI | 256419843 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.140444 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCAAAAC TCCGAATTAA GAAGTCCAGG CGTCTGGTTT TCGTCTTTTT ATTCCTCCTA TGTCTGGCTG CTGGTGGCTG GCTATGGTGG CTGGACAAAG AAGATGCCAT CAATTTTGTA CGATACGAAG AATTTGGTAT TGATATGCCG GTGAATTATT CCATTCATGG AATTGATGTA TCGAAGTTCC AGAAGAATAT CAACTGGTCT GCTGTAGAGC AGATGCAGGT GGACAGGATC CATATATCAT TTGCGTTCAT AAAGGCGACT GAGGGGATTA CCCGTCAGGA TGCCTCATTT AAAACAAACT GGCAGAAGGC CAGGAAGGCC GGTATTGTAC GGGGCGCTTA TCACTTCTTT TATTCTACGA GAGATCCGCT GAAGCAGGTG ATTAATTTTC AGAATGTGGT ACAGCTCGAA TCGGGCGATT TACCGCCTGT GCTGGATATA GAAGTACATA ATAACCAGCC GGCGGCGGTG ATCCGCTCTA CTGCCAGGAT CTGGCTGGAG GAAATGGAAA AGGCCTACGG TGTGAAACCG ATCATTTATA CCAACATACA CTTTTACGAG ACTTATCTCG GAGAGGAGTT TGACAAGTAT CCATTATGGC TGGCGCATTA TTATCAGAAA GAACGACCTT CGACAAAGAG ACAGTGGTTA TTCTGGCAGC ATAGCGATAT CGGCAGGGTG AATGGTATCC GTACAACCGT TGACTTTAAC GTATTCAGAG GAGATAGCCT GGCATTGCGG AAATTATGTC TTCCTTAA
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Protein sequence | MSKLRIKKSR RLVFVFLFLL CLAAGGWLWW LDKEDAINFV RYEEFGIDMP VNYSIHGIDV SKFQKNINWS AVEQMQVDRI HISFAFIKAT EGITRQDASF KTNWQKARKA GIVRGAYHFF YSTRDPLKQV INFQNVVQLE SGDLPPVLDI EVHNNQPAAV IRSTARIWLE EMEKAYGVKP IIYTNIHFYE TYLGEEFDKY PLWLAHYYQK ERPSTKRQWL FWQHSDIGRV NGIRTTVDFN VFRGDSLALR KLCLP
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