Gene Cpin_0797 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0797 
Symbol 
ID8356910 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp961819 
End bp962586 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content45% 
IMG OID644962950 
Productglycoside hydrolase family 25 
Protein accessionYP_003120496 
Protein GI256419843 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.140444 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAAAAC TCCGAATTAA GAAGTCCAGG CGTCTGGTTT TCGTCTTTTT ATTCCTCCTA 
TGTCTGGCTG CTGGTGGCTG GCTATGGTGG CTGGACAAAG AAGATGCCAT CAATTTTGTA
CGATACGAAG AATTTGGTAT TGATATGCCG GTGAATTATT CCATTCATGG AATTGATGTA
TCGAAGTTCC AGAAGAATAT CAACTGGTCT GCTGTAGAGC AGATGCAGGT GGACAGGATC
CATATATCAT TTGCGTTCAT AAAGGCGACT GAGGGGATTA CCCGTCAGGA TGCCTCATTT
AAAACAAACT GGCAGAAGGC CAGGAAGGCC GGTATTGTAC GGGGCGCTTA TCACTTCTTT
TATTCTACGA GAGATCCGCT GAAGCAGGTG ATTAATTTTC AGAATGTGGT ACAGCTCGAA
TCGGGCGATT TACCGCCTGT GCTGGATATA GAAGTACATA ATAACCAGCC GGCGGCGGTG
ATCCGCTCTA CTGCCAGGAT CTGGCTGGAG GAAATGGAAA AGGCCTACGG TGTGAAACCG
ATCATTTATA CCAACATACA CTTTTACGAG ACTTATCTCG GAGAGGAGTT TGACAAGTAT
CCATTATGGC TGGCGCATTA TTATCAGAAA GAACGACCTT CGACAAAGAG ACAGTGGTTA
TTCTGGCAGC ATAGCGATAT CGGCAGGGTG AATGGTATCC GTACAACCGT TGACTTTAAC
GTATTCAGAG GAGATAGCCT GGCATTGCGG AAATTATGTC TTCCTTAA
 
Protein sequence
MSKLRIKKSR RLVFVFLFLL CLAAGGWLWW LDKEDAINFV RYEEFGIDMP VNYSIHGIDV 
SKFQKNINWS AVEQMQVDRI HISFAFIKAT EGITRQDASF KTNWQKARKA GIVRGAYHFF
YSTRDPLKQV INFQNVVQLE SGDLPPVLDI EVHNNQPAAV IRSTARIWLE EMEKAYGVKP
IIYTNIHFYE TYLGEEFDKY PLWLAHYYQK ERPSTKRQWL FWQHSDIGRV NGIRTTVDFN
VFRGDSLALR KLCLP