| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0789 |
|---|
| Symbol | |
|---|
| ID | 8356902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 956399 |
|---|
| End bp | 957154 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644962942 |
|---|
| Product | phenylacetate-CoA oxygenase, PaaI subunit |
|---|
| Protein accession | YP_003120488 |
|---|
| Protein GI | 256419835 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3396] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02158] phenylacetate-CoA oxygenase, PaaI subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.140444 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTAG AACAAGCATT ACCCGAACTG CTTATCAAAA TAGCGGATGA TGAACTGATA
ATTGGCCATC GCAATTCAGA ATGGACCGGC TTAGGTCCGG TTATGGAAGA AGATATTGCA
TTTTCCTCCA TGGCACAGGA CAAGATCGGT CATGCCTGGG CACTCTATCG TATACTACAG
GAACATTTTA ATGGCAGCGA TCCTGATCAG TTTGCGTTTA TGCGAGAAGC GGCAGATTTC
AAATGTAGTC ACCTCGCAGA AATGCCGATC GGTTCCTACG ATTTCAGCCT GATGCGGCAC
TTCCTGTTTG ATCATGCAGA GACGGTACGT TACCAGTCTT TTTCACAGAG CAGTTTCACA
CCGTTACGGC AACTGGCAGC TAAGATAAAG GGCGAGTTGA AGTATCATAC ACTCCATGCA
GATGCATGGA TATTGCAACT GTGCACAGCA GGAGCAGAGA GTAAAAAGCG GATGCAGCAG
GCTCTGGATA ATTGTTTCCA GCTGGCTGGC GGCATTTTTG AACCAGGAGA AGCAGAGGAA
TTACTGATTG CGGAAATGGT GTATCCTGGC GAAGCGGCTT TATACCAACA ATGGCTGAAC
AATATATCAC CCGTTATAGA AAAAGCCGGA CTTACCATCC CGACCATGAC CGCACCGGTT
TATGGCGGAC GGAAGGGACA GCATACAGAA CATCTGCAAC AATTATTAAA CGAAATGGGA
GAAGTATTCC GGTTGGATCC GGAAGCTACC TGGTAG
|
|---|
| Protein sequence | MQLEQALPEL LIKIADDELI IGHRNSEWTG LGPVMEEDIA FSSMAQDKIG HAWALYRILQ
EHFNGSDPDQ FAFMREAADF KCSHLAEMPI GSYDFSLMRH FLFDHAETVR YQSFSQSSFT
PLRQLAAKIK GELKYHTLHA DAWILQLCTA GAESKKRMQQ ALDNCFQLAG GIFEPGEAEE
LLIAEMVYPG EAALYQQWLN NISPVIEKAG LTIPTMTAPV YGGRKGQHTE HLQQLLNEMG
EVFRLDPEAT W
|
|---|
| |