| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0687 |
|---|
| Symbol | |
|---|
| ID | 8356799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 827765 |
|---|
| End bp | 829123 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644962839 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_003120386 |
|---|
| Protein GI | 256419733 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTCA TCAGAAAATA TAATACCGCT GCTCCCCGCT ATACCAGTTA TCCCACAGTA
CCTTACTGGG ATGAATCTTC TTTCAATACC GATACCTGGA AGCAGGCTTT GCTGCAATCC
TTCCGCGCCA CAAACGATAC CGAAGGAATC AGCATTTACA TCCACCTGCC TTATTGTGAA
CAGTTGTGTA CATACTGTGG CTGTAATAAG CATATTACAG TCAATCACGG GGTAGAAGCG
CCTTATATTG ATTCGCTGCT GAAGGAATGG TCATTATACC TGGAATTATT CAAAAAACGG
CCACGCATCA GGGAAATACA TCTCGGTGGA GGCACACCGA CTTTCTTCAG TCCGGAGAAT
CTTCATCAGC TCTTATCAGG CATCTATATG CAGGCCGACC TGCTACCGGA TGCAACCCTC
AGTTTCGAAG GCCATCCTAA TAACACCACC ACGGCACACA TGCTTACACT CTACAATCTC
GGCTTTCGCC GTATGAGTCT CGGCATCCAG GACTTCGATC CGCAGGTACA GGATATCATC
AACCGTATAC AACCTTATGA AACGGTAGAG CGGGTAACCG CTGCCGCCAG AGAAATCGGT
TATACCTCCA TTAACTATGA CCTGGTATAC GGATTGCCCT TGCAGACTAT CACAAGTGTA
AAGGATACCA TCAGCAAAGT CATGCAGCTG CGGCCTGATA GAATTTCCTT CTACAGTTAT
GCACATGTTC CCTGGGTGAA AGGTGTCGGA CAAAGGCGAT ATGCTGAAGA AGATCTTCCA
AAGGACGAAG AGAAAAGAGC CCTCTATGAA CTGGGTAAAA CAATGTTTGC TGAAAGCGGT
TATACAGAGA TTGGTATGGA CCACTTTGCC CTGCCGCACG ACAGCTTATA CCACGCCTGC
AAACAGGGTT CACTGCACAG GAACTTTATG GGTTATACCG ATCACCATAC CTCACTGATG
ATCGGCTTAG GTGCTTCTTC CATAGGAGAT AGCTGGTATG CATATGCACA GAATGAAAAG
AAGATTACTA CCTGGCAACA GTTGGTCAAC AGTGGTCAGT TCCCGGTTGT AAGAGGACAC
ATACTCGATA CGGAAGATCT GCTCCTTCGT CGTCATATCC ACGCACTCAT GTGTGGTTTA
GATACCCGCT GGACACCGGA CGACAATATT GACAGCGTAA TGGAAGAAAG CCTGCAAAGG
CTTACTGAGC TTGAGAAAGA TGGCTTGGTG GATATACAGT ATGGCAGCGT TACCGTCACA
GAAAAAGGCA GACCTTTCAT CCGTAATATC TGTATGGCGT TTGATGCCCG CTTGTGGAGA
AAGCTGCCGC ATTCCCAACT GTTCAGCAAC GCAATCTGA
|
|---|
| Protein sequence | MQLIRKYNTA APRYTSYPTV PYWDESSFNT DTWKQALLQS FRATNDTEGI SIYIHLPYCE
QLCTYCGCNK HITVNHGVEA PYIDSLLKEW SLYLELFKKR PRIREIHLGG GTPTFFSPEN
LHQLLSGIYM QADLLPDATL SFEGHPNNTT TAHMLTLYNL GFRRMSLGIQ DFDPQVQDII
NRIQPYETVE RVTAAAREIG YTSINYDLVY GLPLQTITSV KDTISKVMQL RPDRISFYSY
AHVPWVKGVG QRRYAEEDLP KDEEKRALYE LGKTMFAESG YTEIGMDHFA LPHDSLYHAC
KQGSLHRNFM GYTDHHTSLM IGLGASSIGD SWYAYAQNEK KITTWQQLVN SGQFPVVRGH
ILDTEDLLLR RHIHALMCGL DTRWTPDDNI DSVMEESLQR LTELEKDGLV DIQYGSVTVT
EKGRPFIRNI CMAFDARLWR KLPHSQLFSN AI
|
|---|
| |