| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0644 |
|---|
| Symbol | |
|---|
| ID | 8356755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 783881 |
|---|
| End bp | 785053 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644962795 |
|---|
| Product | DNA-cytosine methyltransferase |
|---|
| Protein accession | YP_003120343 |
|---|
| Protein GI | 256419690 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0270] Site-specific DNA methylase |
|---|
| TIGRFAM ID | [TIGR00675] DNA-methyltransferase (dcm) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000274432 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.895055 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAA TAAAAGTATT AGATCTTTAT TGTGGATACG GCGGACTTAG TATGGGATTT
GAGTTCACCA AGGCATTCGA AGTAGTAGGT GGCATCGATT TTTATGATTG GGCTGTAAAG
ACCTTTTATT ATAATCATCC TCAGCTAAAT AAGTTGAAAG TTATCAACAA GCCTTGCGAT
ATGACCAATC TTGAAACAAG CGAGGTGTTA AAAGATATAG GCGGTAAACC AGATATTATT
GTGGGAGGTC CACCATGTCA GGGATTTAGT TTTGCAGGAA AGCGTCTCGA TGAGTATATG
CATGACAAAC GAAATGAGCA GGTGTTTCAC TTTTTGAGAT TTATTAAAGA AATAAAACCT
AAAGCATTTT TAATGGAAAA TGTGGCTGGC ATCAGGGTAA CAGGCCAACA AAAAAAAGGT
CAGCTAATTG ATTATTTAAT TGAAGAATAT GAAAAAATGG GATATGCAAC TAGTTGGCAG
GTTGTAAATT CTGCTGATTA TCGTGTGCCT CAAAATAGAA AACGCTTCAT GTTAGTTGGC
GTGCTTAAAG GTAAAAAGTT CATTTTCCCA GAGGCCCCTA TACAAGACAA TAATCTTTTT
GGAGGAGAAG AAAGGCTCAC TGTTTATGAT GCTTTATCAG ATCTCCCTTC GCCTAATCAC
GAAGAACCAC AACTTCATAC AATACAGCCG CTCACACCAT TGCAGAAATT TTTGCGTAAT
GAAACGGATA CTATTGCGAA TCATTTAGTG ACAGTACATG GTGAAGAAAT GATAGAGCGA
CTTAAAAAGC AGGAAAACGG AACAAGATTG TATCCTAATT GGAATCATTC CTGGTATAAA
CTTGATCCAA AACGCCCATC TCCGGCAGTT AAAGAAAATC ACCGTGCACC ATTTGTTCAT
TTTCGGGAAC CAAGGGCAAC TTCCCCCAGA GAGTGTGCGA GGCTCCAAAC TGTCCCAGAT
AGTTATGTAT TTTTGGGTAC CAAAACAGCA CAATTAATTA TGATCGGTAA TGCTGTACCA
GCCATACTTT CCGCACATGT GGCTACAGAG ATAGCTAGGC AAATATTTAA AGTTGAGCCT
AAAACTCCCT GGGATAAACA AAATAATCCG TTAACAAAAA ACTGGCTTCC AGAAGCAACA
AAAGAGAATT TAGTTAGTAA CTGTGCTATC TAG
|
|---|
| Protein sequence | MEKIKVLDLY CGYGGLSMGF EFTKAFEVVG GIDFYDWAVK TFYYNHPQLN KLKVINKPCD
MTNLETSEVL KDIGGKPDII VGGPPCQGFS FAGKRLDEYM HDKRNEQVFH FLRFIKEIKP
KAFLMENVAG IRVTGQQKKG QLIDYLIEEY EKMGYATSWQ VVNSADYRVP QNRKRFMLVG
VLKGKKFIFP EAPIQDNNLF GGEERLTVYD ALSDLPSPNH EEPQLHTIQP LTPLQKFLRN
ETDTIANHLV TVHGEEMIER LKKQENGTRL YPNWNHSWYK LDPKRPSPAV KENHRAPFVH
FREPRATSPR ECARLQTVPD SYVFLGTKTA QLIMIGNAVP AILSAHVATE IARQIFKVEP
KTPWDKQNNP LTKNWLPEAT KENLVSNCAI
|
|---|
| |