Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0610 |
Symbol | |
ID | 8356721 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 747958 |
End bp | 749319 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644962761 |
Product | outer membrane efflux protein |
Protein accession | YP_003120309 |
Protein GI | 256419656 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGGA TAATGTTAAC GCTTATTCTC TTAATGGGAA TAGGGGGATA TACCTCCTAT GCGCAATCGG AACTGTCGTT GCAGGAGTGC CTGAAGTATG CACTCGCTAA TAACCAGCAA CTGGCACGTA CCCGGATGGA AGAAGATATG GGCCGTTTCA AAACCAGCGA AGTAAGAGCC AGAGCCCTGC CACAGGTAAA CGCGCAAGGT CAGTATACCA ACAATATTAA GAAACAGGTG ATCCCCGTTC CCGGCGAATT TGCCGGTGGC GCACCTGGTA CCACCCTCCT GCTGGAAGCT GGTGTGACGC ACAACGTGAC CGCATCTGGA ACCGTTACGC AGGAAGTGTA TAATCAATCT GTATTCACCG GCTTAAAAGC AGCAAAAGCA GGCGAAGATT ATTATCGCAT GCAGACAGCG CAAAGCGAAG AAACCGTTAT CTATAACGTC ACACAGCTGT ATTACAGCAC ATTGGTGTCC CGTGAGAAAA CAATCGTACT GGATGCCAAT ATCGAGAAGA TGACAAAACT CGTCGAAACA ACTTCTTCTC AGGTAGAAAA CGGTCTCGCC CGTAAAATAG ACCTGGACCG TATGCGTGTA AACCTGACTA ACTATAAAAC GCAACGCACA CAAGCACAGA ACCAGTTCCA ACTGCAATCT AACCAGTTGA AACAGATGAT GGGCATGGCT GTAACCAATC CGATCAATCT TCCTTCCACT TCTTTTAAAG AAATTGAAAG CAAAGCAACG GCTGCCGATT TTGGAGGCAT GAACCTCGAC AACAGGATCG AGTATCGCCT CCTGAAAAAA CAGGAAGAAC TACAGGCATT TCAGAAGAAA GCTTACCTGG CAGAATATTA CCCTTCACTG GCCCTCTCCG GTAACTACTC TTATAATGGT ATCAGTAACA AGTTTGACAT GTTAAAATCC AAATCCAACG GATCAACTGC CAGTTGGTAT GATATGGCTG CTGTAAGCCT CACTTTGAAA ATTCCGATTT TCGATGGTTG GGCGCGCCGC TCCCGTGTAG GTCAGGCAAA TGTAGCCCTG AAACAGATTA AGAAGGATAT GGAGGCCACC ACCCTCTCCC TGAATACACA ATTCGAAAAC GCAAAACTAC AGGTTCAGAA CAACCTCAGT ACGATCAAAG CGCAGAAAGA GAACGTAGAC CTGGCCAACG AAGTGTACAA CTCCACCCAG AATAACTATA ACCTGGGCCT GGCCAATCTG ACAGACCTGC TGGATGCCGA AACATCCCTG GTCTCTGCTC AGAACAACTA CAATGAAGCT TTATTACAAT ACAAGCTGGC AGAACTGGAT ATCGTTAAAT CGAACGGTAA TCTCAAAAGC CTGCTGAACT AA
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Protein sequence | MKRIMLTLIL LMGIGGYTSY AQSELSLQEC LKYALANNQQ LARTRMEEDM GRFKTSEVRA RALPQVNAQG QYTNNIKKQV IPVPGEFAGG APGTTLLLEA GVTHNVTASG TVTQEVYNQS VFTGLKAAKA GEDYYRMQTA QSEETVIYNV TQLYYSTLVS REKTIVLDAN IEKMTKLVET TSSQVENGLA RKIDLDRMRV NLTNYKTQRT QAQNQFQLQS NQLKQMMGMA VTNPINLPST SFKEIESKAT AADFGGMNLD NRIEYRLLKK QEELQAFQKK AYLAEYYPSL ALSGNYSYNG ISNKFDMLKS KSNGSTASWY DMAAVSLTLK IPIFDGWARR SRVGQANVAL KQIKKDMEAT TLSLNTQFEN AKLQVQNNLS TIKAQKENVD LANEVYNSTQ NNYNLGLANL TDLLDAETSL VSAQNNYNEA LLQYKLAELD IVKSNGNLKS LLN
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