Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0596 |
Symbol | |
ID | 8356707 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 727209 |
End bp | 730961 |
Gene Length | 3753 bp |
Protein Length | 1250 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644962747 |
Product | SNF2-related protein |
Protein accession | YP_003120295 |
Protein GI | 256419642 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.160311 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCTGC CCCAGTTGCT TAAATACGTT TATAATAACG GAACCGATGA GGTGATCCGT AGGGGGAAGC GCATCTTTGC GACTGGTGGT GTGGAATTGT TAGAAGCTGA TCCGGTTTTG AAATCAGCCA CGTTCCGGGT AAAGAGCGAT ACCCATGCGA ATTATTATCG CGTTTCAATC AGCAAATATC ACGAGACGAG CAATATGTCC GTCCGTTGTC AATGTCCTTA CAACCTGGGA GACATCTGCA GGCATGAAGC CGCAGCCATG TTCCAGTTGC AGGAAATGCT GGACAAAAAT CACTTCGAAA GCTACGATAC GCAATATAAC CAGCAACATA CGCTGGTAAA GATGAAGTTT ATTGATCTGA AATCGCTTAA ACTGCTGACT TCCAACGAAA TATTTGCGGA AGCAGAGAAA ATGGCCAAAC CGGCTAAAGC GTTTAAGATC GCATCCGCCA AGGATGAAAA GGTGGAAGCC ACACTCAAAT ATGAAGGGCA GGAATATCCG ATGATCATAC AGCGGAATGA AGAACGCTTT TTCGATACCG CCTGTAACTG TGATGAAACA GAGCATGCCA TCTGTAAACA CAAGACAGCC CTGTTTCTCA ATCTTTTAAA TAATCACGGT CCATATTATT TCGATACCCT GCGTAACTGG GACAAGGAAA AGAATAAACT GCTTGCCTTG TACGGGTACT CACTGGATGA TAACCTGGAA GGAAAATTTA CTTTCACCTA CATGGAGGGG AAACCCTACC TGCGTGTACT GGATCCCGCC ATCAAAAGAG TGGATGGTGT GGCGATCAGC AAACAGGCAG CTGCTGCGGC TCCTCCCCCT CCAACGGAAG AAACGAATAC TATTACCCAG CGTATCGGGG TAGTTTTCAA TGCTAACGAA CCACTATATC CGTTCTTCCG GATCGACCTG GTAAGTGGTG AAGTAAATGA TGAACAACGT GAATTTGTAT CATTAGTCAA TAAACTGGAT CTGACCAAGT ATGTTGACTT CTATTTATAT AAAGAATCTG ACCGTGACCT GATCACGCCT GTGCGTAAGG TACAGGGTAT GGAGGTTAGT AAATTCCTTA GTAAGAACTC CCCTTTTGCG GGTATCTGGG AGAATATCAC ACATGACCAT AACGAATCTG ACCTGCCAAC AGAAACCAAG GAACTGATGC TGGAATACCT GCATCCGAAA CTGGCGAAGC TGTTTCCGCA GATGGCAGCG CACGGTTTGT TATTTCTCCT GCCTAACAGA CAACAATTCA AGACCAAAAA TCTTCAGCAG ATACACCTGG CCGGTGACAG ATTACAGCCT GTGTTTAAAA CACATACCCT GAATGATGCC ATCGAGGTGA CCTGTCATCT GGAGATCGAA GGTGAACTGG TAAATGTGTC TGAAAATGAA TGGGATAGCT CTATCCTCTT CCTGAAGAAC AAGGTGTTAT ACCTTTTCGA AAATCCACAG GATGCACTGC ATATCGAATT ATTCCGCGAA AGCGGTAAAA TCCGTATCCC TGCCGATCAG TGGAGCACTT ATTTACAGGA TTATCTCTTA CCGCTGAGCA AACAGTATCA GATACAGTTT GATAATTCGC TGCTGGCGGA AGTAGATGAT ATATTACCGG AATGCAGGGT GTTCCTGCGT GAGGTAGGCG AGACATTTAT TATCCAACCA GGATTTGCTT ACCATGGACA GGAAGTTGAA TGGAATGATG ACGGTAAGAT CACGGTACAG GAGGGTAATA AGGTCCTGAT CATCCACAGA AACAAGGAAG CCGAACAGCA ATTCGTAGAA AAGCTGAGCG GACTGCATAC CAACTTCTCA CAGCCCAATA CCAATAACTA TTTCTACCTG AAGGCAAAAG AAGCGTTGAA GAACAACTGG TTCTTCCTTT TCTTCGATAC CCTGAAGGAA ATGAATGTGC GTGTATTCGG TTTTGAGAAC CTGAAAAACT TTAAGTTCAG CGCTCATAAA CCAGTTACCA ATCTGCAGAT CAGTTCCGGT ATTGACTGGT TTGATGCGCA GATCGAAGTG ACTTATGGCG ATCAGAAAGT AAGTATCAGG GAAATCAAGC AGGCGCTGGC AGGTAAACAG AACTATGTGC AACTGGCTGA CGGTTCACTT GGGCTGCTGC CGGAAGAGTG GCTGAAGAAA TACTCCCTGT TATTCAAGAT CGGGGAAGAA AAAGACAAAG GTGCGCTGAA GCTGAGCAAG TATAATTTCA GCGTGATCGA TGAACTGTAT GAGTTTATTG ACGATGAGGC GGTATTGATG GAACTGGAAC AGAAGCGTCG TAAGCTGCTT CAGTTTGACG AGATCCGCAA TATATCGTTG CCGCATAACC TCCATGCTAC TCTCCGTCCT TACCAGGAAA GTGGTTTCCA GTGGCTGAAC TACCTTGATG AAGTGAAGTG GGGAGGTATC CTGGCCGATG ATATGGGTCT TGGTAAGACA ATTCAGGCGC TGACATTCAT CCAGCATTAT AAGAATAAGC ACGATGATAA ATGTCTGGCG CTGGTAGTAT GTCCTACGAC GCTGATCTAT AACTGGGAAA ATGAGATCCG CAAGTTTACG CCGAGTATGA CGTATCATAT TCATCACGGT CCTACCCGTC TGAAAACAGC GGAAGAACTG ATGAAGTTTG ATATCCTGAT CACTACATAT GGTACACTAC GTAGTGATGT ACAGACGCTG ATGAAACTGG ATCTGGATTA TGTGGTACTG GATGAATCGC AGGCGATCAA AAACCCGCAG AGTAAAGTAA CCAAAGCGGC GCAATTGCTG AATACCAGGA ACAAACTGGC ATTGAGTGGT ACGCCGATGC AGAATAATAC ATTTGATATC TACGCGCAGA TGAACTTCCT GAACCCGGGT ATGCTGGGTA GTGTGGACTT CTTCCGTAAT GAATTTGCTA CGCCGATAGA CAAATTCCAG GATGAAGAAC GTAAGGACCA TTTGCGTAAG CTGATCTATC CGTTTATCCT GCGCCGTACG AAAGAGCAGG TGGCAAAAGA ACTGCCTGAG AAGATCGAAA CTGTGATCTT CTGTGAAATG GATGCGGAAC AGCGGCATAT CTATGACGCA TATCGTAACT CTTACCGCTC CAAGATCCTG GGTGTTATTG AAGATCAGGG TATGGAACGT TCGCAGCTGA CGATCCTCCA GGGTCTGATG AAACTGCGCC AGATCTGTGA CTCTCCGGCC ATCCTGAATG AGGCGGAACA GTATCCGAAC CATTCTGTGA AGCTGCATGA GCTGACCCGT GAGATGAGTG AGAATATCAG TAACCATAAG GTGTTGATCT TCTCCCAGTT CCTCGGTATG TTGGGGCTGA TCCGTGAGAA ACTGCAACAT ATGAAGGTGC CGTTTGAGTA TTTTGATGGT AGTACTTCCG CTACTGAGCG TGAACGCGCG ATTCAGAATT TCCAGACCAA TGATGACTGC AGGGTATTCC TGATCTCGCT GAAAGCGGGG GGGGTGGGTC TGAACCTGAC GGCGGCGGAC TATGTATATA TCGTTGATCC ATGGTGGAAC CCGGCAGTAG AGCAACAGGC GATTGACCGT ACCCACCGTA TTGGTCAGAC GAAAAACATC TTCGCCTACA GGATGATCTG TAAAGATACA GTAGAGGAAA AGATCCTGCA ATTACAGGAG CGTAAGAAAT CACTGGTTAA AGAGATCATT GCAGATGATT CCGGATTTGT GAAGAAACTG ACGAAAGAGG ATGTATTGTA TCTCTTCAGT TAG
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Protein sequence | MSLPQLLKYV YNNGTDEVIR RGKRIFATGG VELLEADPVL KSATFRVKSD THANYYRVSI SKYHETSNMS VRCQCPYNLG DICRHEAAAM FQLQEMLDKN HFESYDTQYN QQHTLVKMKF IDLKSLKLLT SNEIFAEAEK MAKPAKAFKI ASAKDEKVEA TLKYEGQEYP MIIQRNEERF FDTACNCDET EHAICKHKTA LFLNLLNNHG PYYFDTLRNW DKEKNKLLAL YGYSLDDNLE GKFTFTYMEG KPYLRVLDPA IKRVDGVAIS KQAAAAAPPP PTEETNTITQ RIGVVFNANE PLYPFFRIDL VSGEVNDEQR EFVSLVNKLD LTKYVDFYLY KESDRDLITP VRKVQGMEVS KFLSKNSPFA GIWENITHDH NESDLPTETK ELMLEYLHPK LAKLFPQMAA HGLLFLLPNR QQFKTKNLQQ IHLAGDRLQP VFKTHTLNDA IEVTCHLEIE GELVNVSENE WDSSILFLKN KVLYLFENPQ DALHIELFRE SGKIRIPADQ WSTYLQDYLL PLSKQYQIQF DNSLLAEVDD ILPECRVFLR EVGETFIIQP GFAYHGQEVE WNDDGKITVQ EGNKVLIIHR NKEAEQQFVE KLSGLHTNFS QPNTNNYFYL KAKEALKNNW FFLFFDTLKE MNVRVFGFEN LKNFKFSAHK PVTNLQISSG IDWFDAQIEV TYGDQKVSIR EIKQALAGKQ NYVQLADGSL GLLPEEWLKK YSLLFKIGEE KDKGALKLSK YNFSVIDELY EFIDDEAVLM ELEQKRRKLL QFDEIRNISL PHNLHATLRP YQESGFQWLN YLDEVKWGGI LADDMGLGKT IQALTFIQHY KNKHDDKCLA LVVCPTTLIY NWENEIRKFT PSMTYHIHHG PTRLKTAEEL MKFDILITTY GTLRSDVQTL MKLDLDYVVL DESQAIKNPQ SKVTKAAQLL NTRNKLALSG TPMQNNTFDI YAQMNFLNPG MLGSVDFFRN EFATPIDKFQ DEERKDHLRK LIYPFILRRT KEQVAKELPE KIETVIFCEM DAEQRHIYDA YRNSYRSKIL GVIEDQGMER SQLTILQGLM KLRQICDSPA ILNEAEQYPN HSVKLHELTR EMSENISNHK VLIFSQFLGM LGLIREKLQH MKVPFEYFDG STSATERERA IQNFQTNDDC RVFLISLKAG GVGLNLTAAD YVYIVDPWWN PAVEQQAIDR THRIGQTKNI FAYRMICKDT VEEKILQLQE RKKSLVKEII ADDSGFVKKL TKEDVLYLFS
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