Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0545 |
Symbol | |
ID | 8356651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 648742 |
End bp | 650154 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644962691 |
Product | MATE efflux family protein |
Protein accession | YP_003120244 |
Protein GI | 256419591 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACATA CACAGGCAGG TTCCCGCCTG GGCAAGGCAT TCCGGCTGTT TATAATGGCT GTGTCAGGTA CGGAAAAAGA ATTTACCAGT GGTAATATCA ACCGTGCTAT TTTTTTATTA TCTGTTCCGA TGATACTGGA AATGGTGATG GAGTCACTGT TTGCAGTTGT TGATATATTT TTTGTAAGTA AACTGGGTAA ACATGCGATT ACTACTGTTG GACTGACAGA GTCTATCATG ACGCTGGTAT ACACTGCTGC ATTCGGTTTA AGCATGGCGG CTACGGCTGT TGTGGCACGC CGCACAGGTG AAAAGGACAA TGATGCAGCT GCACATACTG CTGTACAGTC ATTGTACGTC GCGCTTGTAC TGGCAGTTAT TATCGCTTTC ATCGGTATTG TATTTGCCAG TGAAATACTT GCTTTAATGG GTGCCTCTGA TGAGGTGATC TATAACGGAT ATATTTACAC GCAGATTATG CTAGGAGGTA ACCTGATTGT TATCCTCATA TTTCTGATCA ATGGTATATT CAGAGGTGCT GGTGATGCAG CTGTCGCCAT GCGTTCCTTA TGGATTGCGA ATATTCTGAA TATCCTGCTG TGTCCTTTAC TGATTAATGG ATTCGGACCT GTTCCGGCCT TAGGCCTGAA AGGCGCTGCA CTGGCCACTA CGATTGGCAG AGGTATTGGT GTCTGTTATC AGTTATATCA CCTGTTTGGA GGTAAAGGAC TGATAAAAAT AAACAGTCGT CACTTGCTGC CTGATATGAG CGTGATCATA AGATTACTTA AAATAGCAGC AGGTGGTACT GCGCAGTTGC TGATCAATAC TGCCAGCTGG ATATTCCTGG TCAGGTTAAT TGCCCGGTTT GGAGAAGATG CCGTTGCCGG TTATACGATA GCAGTGCGTA TTATTATTTT TACCCTGTTA CCTGCTTCCG GTATGGCGAA TGCGGCCGCG GCACTTGTGG GACAGAACCT TGGCGCCGGA CAACCAGACA GAGCGGAAAC CTCGGTGTGG AGAGCCGCAT TTTTCAACAT GCTTTTCCTG GGATTTGTAT CGGTATTTTT CCTGCTGGCA GCAAGACCTA TCGTTATGTT GTTTACACAG GATACGGGTA TTATCGCTTA TGCTGCCCAG TGTTTGCAGC TGGTCAGCGT GGGTTATATA TTCTACGCCT ATGGCATGGT GCTTTCGCAG TCCTTTAACG GCGCTGGTGA TACGCGTACG CCTACGCTGA TCAATCTTGT CGGTTTCTGG ATGTTGCAGG TCCCGATGGC CTGGATGATG GCGGTGAATT ATAATATGGG CCCTGCAGGC GTGTTCTGGG CGATTGCTAT CGCCGAGTCC TGTGTAGCGG TTGCAGCAAT ATTTATATTC AGGAAAGGAT GGTGGAAGCG GGTAAAAGTT TAG
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Protein sequence | MQHTQAGSRL GKAFRLFIMA VSGTEKEFTS GNINRAIFLL SVPMILEMVM ESLFAVVDIF FVSKLGKHAI TTVGLTESIM TLVYTAAFGL SMAATAVVAR RTGEKDNDAA AHTAVQSLYV ALVLAVIIAF IGIVFASEIL ALMGASDEVI YNGYIYTQIM LGGNLIVILI FLINGIFRGA GDAAVAMRSL WIANILNILL CPLLINGFGP VPALGLKGAA LATTIGRGIG VCYQLYHLFG GKGLIKINSR HLLPDMSVII RLLKIAAGGT AQLLINTASW IFLVRLIARF GEDAVAGYTI AVRIIIFTLL PASGMANAAA ALVGQNLGAG QPDRAETSVW RAAFFNMLFL GFVSVFFLLA ARPIVMLFTQ DTGIIAYAAQ CLQLVSVGYI FYAYGMVLSQ SFNGAGDTRT PTLINLVGFW MLQVPMAWMM AVNYNMGPAG VFWAIAIAES CVAVAAIFIF RKGWWKRVKV
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