| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0488 |
|---|
| Symbol | |
|---|
| ID | 8356594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 585844 |
|---|
| End bp | 586968 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644962634 |
|---|
| Product | oxygen-independent coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_003120187 |
|---|
| Protein GI | 256419534 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGTA TTTATCTACA TATTCCTTTT TGTAAGCAGG CTTGTTACTA CTGTAACTTC
CATTTTTCCA CTTCATTGTC GCAGCAACCA GCCCTGGTTA AGCAACTGGT AAGGGAAATA
GATTTACAAC GCAATTATCT CTCCGGCGCC CCGGTAAGCA GTATCTATTT CGGTGGCGGC
ACCCCCAGTA TGCTTCCGCA GGCTGATATA CAGCTGCTGC TCAGTAAACT GCGGGATACC
TTCCCGGTTA ATCCGGACGC AGAGATCACC CTGGAAGCCA ATCCGGATGA TCTTTCTCCT
GGAAAACTGG ACGCCCTCCG CGCTGCTGGT ATCAACCGGC TGAGTATCGG TATACAGTCC
TTTCATGAAC CGGATCTGCG CTGGATGAAC CGTGCGCACG ATAGTCAGCA AGCCTTGCAA
AGTATCATCA ATGCAAAGGC TGCCGGCTTT GATAACCTGA CCATAGACCT GATATATGGT
GGACCGACGC TGACTGATGA AGGATGGGCT GCCAATGTAC AACAGGCCAT CGACCTGGGT
GTACAACATC TTTCCTGTTA TGCACTGACC GTAGAACCCG GCACGGCGCT GGACCAGTTT
ATCCGGAAAA AGAAAGTAGC TGCCGTTGAT TCCGATAAAG CTGCCCGTCA TTTTGAACAA
CTCATGCAAT GGACGGCAAA AGCCGGCTAT GAGCATTATG AAATATCCAA CTTCGCCCTT
CCCGGCTGGC ACTCCCGTCA CAACAGCAGT TACTGGCAGG GACAGCCTTA CCTCGGATTA
GGGCCTTCGG CACATTCCTT CAATGGTGGT TCCCGTCAGT GGAACATTGC CAACAACGCG
CAGTATATCA AAAGCATGGA GCAGGATAAA GTGCCTTTCG AACTGGAAGA ACTGACGGCT
GTTATGATGC TGAATGAATA TATCATGACC ACCCTGCGTA CCTCACAGGG CTGTATACTG
CCCGTAGTCG CGGAACGTTT CGGTACTGAC AAACGGGATA CTCTCCTGCA ACTATCCCGG
ACTTTCATCG ATAAAGGCTG GATGATTCTC CGCAACGATA CCCTGGTACT GACGCCGGAA
GGCCGGCTTT TTGCCGATGG TATTGCCTCA GATCTCTTTT TCTGA
|
|---|
| Protein sequence | MAGIYLHIPF CKQACYYCNF HFSTSLSQQP ALVKQLVREI DLQRNYLSGA PVSSIYFGGG
TPSMLPQADI QLLLSKLRDT FPVNPDAEIT LEANPDDLSP GKLDALRAAG INRLSIGIQS
FHEPDLRWMN RAHDSQQALQ SIINAKAAGF DNLTIDLIYG GPTLTDEGWA ANVQQAIDLG
VQHLSCYALT VEPGTALDQF IRKKKVAAVD SDKAARHFEQ LMQWTAKAGY EHYEISNFAL
PGWHSRHNSS YWQGQPYLGL GPSAHSFNGG SRQWNIANNA QYIKSMEQDK VPFELEELTA
VMMLNEYIMT TLRTSQGCIL PVVAERFGTD KRDTLLQLSR TFIDKGWMIL RNDTLVLTPE
GRLFADGIAS DLFF
|
|---|
| |