| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0456 |
|---|
| Symbol | |
|---|
| ID | 8356562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 544497 |
|---|
| End bp | 547490 |
|---|
| Gene Length | 2994 bp |
|---|
| Protein Length | 997 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644962602 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003120155 |
|---|
| Protein GI | 256419502 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG GAGTATTCCT GTATCTGTTT TCATTAATAT CTGTGCTGCC AGCATTCGCG
CAGATGAGAA CACTTACAGG CACTGTTACT GCCGACAGCA GCGGCACGCC TCTGCCCGGT
GTTACTATCC ATCTGAAGGG CTCTACCTAT CGCCTTGCCA CAAATCCTGA TGGATCTTAT
ACTATGAGCA TCGGGGGAAC ACCCGAACTG CAATTTTCTA TGGTCGGGTA TCTGTCCCGA
CAGGTAAAAG TCGGACCGGA TATGACCCGG CTCGATGTAA AACTGGAGCC TGTATCTTCC
AAACTATCAG AAGTAGTCGT AGTCGGATAT GGAGAACAAT CCCAGCAGTA TACCACAGAA
GCCTTATCAG TAGTGAAAGC AGCTGATTTT GCCAATGTAC CGGCTGTTAC TCCCCAGCAA
CTGCTGCAAG GACAGGTGGC GGGTGTCAGC ATGACCAATT CTTCCGGTCT GCTGGGCAAT
GCTTCATTAC TCCGCGTAAG AGGAACTGCT TCTATTACCG CTGGTACACA GCCATTATTC
ATTATAGATG GTGTACCCCT GAATGACGGT TCATATAATA CAGCCTATGG TGGTGGCGCT
TCGCTGAATC CATTGCTGGA AATGAATCCT GATGATATTG AATCTATTAC CGTACTGAAA
GATGCTGCGG CTGCCGCAAT TTATGGTTCA AGGGGTTCTA ATGGAGTGAT ATTGATACTG
ACCAAAAAAG GAGGCTACAG GAACAAAACT CAGGTAAAGC TTGATTATGC TACCGGCTGG
GTAAACCCTA GCGGTAAGAT AGATGTCATG AACGGTGACG AATATGTTAA TTTCTATAAT
AATTATGTTA CCAAAGCGAT AGGTGCTACT CCGATTACGG CCCCGGCGTC GTTTACTGAC
TGGCCATCAT TGGTGAGCAG GACTGGCCGC AACAGTAATT ATGCATTATC AGCAAGTGGG
GGTAACGAAA AGACCCGTTT CTACTTAGGT GGAAATTATG CAAAAGATGA AAGTTTTGTA
ATAGGAAACA ACCTGCAGAA ACTGTCCGGC AGGGTTAACC TGGAGCATAC AGCAAATAAA
TATTTAGCAC TGGGAGTAAA CTTCAGTACG GCCTATACGA ATATGGACCG TATAAATATT
GAAAGTGGTT CACAGGCGCC TTATACCAGG GGTTTGCTGA ATACGCCTAC TACGCTTGCT
TATACGGATG ACGGAGAGTA TTTTCTTCCT GCAAGCAATA CATTGGCGAG TGTTTACCTG
AGCACAAACA AGTATTACAC GCGGCGTAAT ACCGGTAATG CTTATGCCAA ACTAAATATC
ACTGACTATT TATGGTTGAA AACTGACTGG GGCATGGACC TGCTGGAAAC AGAAGAACGT
TTTCGCAGAT CTTCTAAACT GGGAGGTACC GGTACAGCAG GACGTACCAT CTGGCAGGAT
TATAAATGGC TGACTACCAA CAGTATCAAT TTTGATAAAC GCTTCGCTGA AGTACACCAG
GTCTCCTTAT TGGCAGCATA TAGTTATGAA ACTGCCAGAT ATGATGATAT CAAGGTAACA
GGTACCGGCT TTACCAGCGA CCAATTGCTG AACGTCGGAT CTGCTGCAAC GAATACGGGT
TCTGCCACCG GGAAAGCCTG GGGCTTGGAA TCCTATATCT TCCGTGGTAA CTACCGCTTC
AAAGACAAAT ACCTGTTTGA AGGTAGCTTC CGTCGCGACG GTTCTTCCCG CTTCGATGGC
AATAACCGTT ATGGTAATTT CTGGGCAGTA TCCGGAGGCT GGATTATGTC AGAAGAGCAA
TTTATCCGTA AGCTTGGTTT CATTGATTAT ATGAAGCTTA CTGCAAGCTA TGGCGTAACT
GGTAATGACC GTATTGGGTA TTATGACTAT ATGGGACTGT ATACTGCCGG AGTTGACGCT
AACTATGCAG GACAATCTGG CCTGAGACCT ACACAGATAA AAAATCCCAA ACTCAGCTGG
GAAGAAAGTC GTCAGCTGGA CCTGGGACTT GCAGTGAATG TGCTGGATAA CAGACTTCAG
TTGTCATTTG ATTATTATCG GAAGCATTCA GAGAATCTGC TGTTATACGT AGTTGTTCCA
TCTACTACAG GTTTTGGTTT TGCCACTAAA AACGCAGGTG AAATGCGTAA CAGCGGCATC
GATCTGCAGA TAACAGGCAT ACCTGTAAAA ACAAGAGATC TGCAGTGGAC CACTTCCTTA
AATATGGGAC TGTTAAAGAA CAAGGTATTA TCATTACCGC CTGATAACAG AGATGATGAA
GGCAGGCATT ATATCCTCAG TTCTAATAAT AACCAGCGCG TAGTAGAGGG CTATACACTG
AACACTTTTT ACCTGGTTAA ATATAAAGGG ATCAATCCTG AAACAGGTGA CCCTGAGTGG
TATACAAAAG ACGGAAAAAC TACCAGTACA CCTACTGCCA AGGACCAGAT CGTTGCAGGT
AGTGCTTTGC CAAAATGGAC CGGTGGATTT AACAATACTG TCCGTTATAA ACAGTTTGAT
CTGAATGTAA ATTTCTACTT CTCTTATGGC AATAAAGTAT TGCTGAATGA ATTTAAGGAG
CTTGATAACG TGAATAAAAG TACAGCAACC AACCTGAGTA AGGATCTGCT GAATTACTGG
CAGAAACCAG GTGATCAGGC GTTTGCACCA GCAGCAACCA GTACATCATG GAAAAATGGA
AACAGCTTCT CACAGTTGTC CACTGCGCAG CTTTTCAATG GCTCCTTCCT GCGTTTGAAA
ACGCTTAGCC TGGGTTACAA TGTACCAGCT AATCTGTTGA GCAGTACACG CGTATTGAGT
GGCGCCCGCT TGTATGTAAT GGGGCAAAAC CTCTGGACAG TAAAGGATAA AAACTTCCGT
GGAGCTGATC CTGAAGTATC CCAGTATGGT ACCAATGCAC AGGTAGCCGG AGAAGGATAC
TATTCTCTGC CTCAGCCTAA ATCGATCACT GTAGGTGCAA ACATGGTATT TTAA
|
|---|
| Protein sequence | MKKGVFLYLF SLISVLPAFA QMRTLTGTVT ADSSGTPLPG VTIHLKGSTY RLATNPDGSY
TMSIGGTPEL QFSMVGYLSR QVKVGPDMTR LDVKLEPVSS KLSEVVVVGY GEQSQQYTTE
ALSVVKAADF ANVPAVTPQQ LLQGQVAGVS MTNSSGLLGN ASLLRVRGTA SITAGTQPLF
IIDGVPLNDG SYNTAYGGGA SLNPLLEMNP DDIESITVLK DAAAAAIYGS RGSNGVILIL
TKKGGYRNKT QVKLDYATGW VNPSGKIDVM NGDEYVNFYN NYVTKAIGAT PITAPASFTD
WPSLVSRTGR NSNYALSASG GNEKTRFYLG GNYAKDESFV IGNNLQKLSG RVNLEHTANK
YLALGVNFST AYTNMDRINI ESGSQAPYTR GLLNTPTTLA YTDDGEYFLP ASNTLASVYL
STNKYYTRRN TGNAYAKLNI TDYLWLKTDW GMDLLETEER FRRSSKLGGT GTAGRTIWQD
YKWLTTNSIN FDKRFAEVHQ VSLLAAYSYE TARYDDIKVT GTGFTSDQLL NVGSAATNTG
SATGKAWGLE SYIFRGNYRF KDKYLFEGSF RRDGSSRFDG NNRYGNFWAV SGGWIMSEEQ
FIRKLGFIDY MKLTASYGVT GNDRIGYYDY MGLYTAGVDA NYAGQSGLRP TQIKNPKLSW
EESRQLDLGL AVNVLDNRLQ LSFDYYRKHS ENLLLYVVVP STTGFGFATK NAGEMRNSGI
DLQITGIPVK TRDLQWTTSL NMGLLKNKVL SLPPDNRDDE GRHYILSSNN NQRVVEGYTL
NTFYLVKYKG INPETGDPEW YTKDGKTTST PTAKDQIVAG SALPKWTGGF NNTVRYKQFD
LNVNFYFSYG NKVLLNEFKE LDNVNKSTAT NLSKDLLNYW QKPGDQAFAP AATSTSWKNG
NSFSQLSTAQ LFNGSFLRLK TLSLGYNVPA NLLSSTRVLS GARLYVMGQN LWTVKDKNFR
GADPEVSQYG TNAQVAGEGY YSLPQPKSIT VGANMVF
|
|---|
| |