| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0409 |
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| Symbol | |
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| ID | 8356515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 492935 |
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| End bp | 496315 |
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| Gene Length | 3381 bp |
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| Protein Length | 1126 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644962555 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003120108 |
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| Protein GI | 256419455 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATAC AGGCTGTTTT ACAACTGTAC CAGCGAGATT CCCGCCTGCA ACAGCTGGTG
AAAGGGATAC ATTTGTCCGA TCCACAGTAT TTTCAATTAA CAGGATTAAC AGGAAGTGCC
ACCACATTCG TAGCTGCGGG AGCTTGGGAG ATGGCCAATT CCGTTAATCA CCTTTTCATT
CTCAATGACA GAGAAGAGGC CGCCTATTTC CATAATGACC TTGAGTCAAT TACGCAGGGG
CTGGACATCT TCTACTTCCC GGACTCCTTT AAAAAGGCCG GCTTCTTCAA CGAGATCAAC
AGTAGTCATA GTATGCTGCG TACGGAGGCA CTGATGAAGT TCTCCGGTAA TGCCGTACAC
AAGAAAGTAT TGGTTACCTA CCCGGAAGCA CTCTGGGAAA AAGTAGCAGC TTCTGTTGCC
TATACAGGCA ACATGGTGCA GCTGAAAGTA GGCGACGTAC TGAAAGTGGA TGACCTGCTG
AACAAACTCG TCAGCTGGGG CTTTGAGTTC ACTGACTTTG TGTATGAACC GGGACAGTAT
GCGCTGCGTG GCGGTATCCT CGATATCTAC TCGTTTGGTA ATGAAAAGCC TTACCGTATT
GAACTGTTTG GAGAAGACAT CGATTCTATC CGTCTGTTTG ATCCGGAAAG TCAGCTGAGT
GAACGTAAGC TCAATCAGGT TACACTGATT GCCAATATGG ATACCCAGGG GCTGAAACAC
GAGAAAGCCT CCCTGCTGGG CTTCCTTCCT GAAAATACCA TTGTCTGGAT GAAAGACCCT
GGTTATGTGC AGGACGTGAT CCTGCAACTG GAAGAAAGAC TGGATGCTTT TCTGCAAACG
GGGCAACAGG TGAAGGTAGG TGATGATGAT ACCATCGCAT TATCAGAAGC TGACTTTGTC
AAAGCACATG CGATGATGCA GGACCTGCTG CGCAGACACT GTATTGTATT CGGTAGTCGC
CAGTGGTGGG AAGATACCAA TCGTGCTTTC ATACCGCTGA ACTTTGAAAC GCAGGAACAA
CCTGTCTTTA ACAGACAGTT TGAAATGCTG ATCAAAGATC TCGACGCGCA CAACAAGAAT
AAATACACAC TTTTCATCTT CGCAGAAAAT GCCCGTCAGC TGGAAAGGCT GCGCAGCATT
TTTGAAGACC TGAAAGCTGA TTTTACCTTC TTCCCGATCC CCTCTCCTGT CAGCCATGGC
TTCATTGATC ACTCGCTGAA ACTGGTATGT TATACTGACC ACCAGATCTT CCAGCGTTAT
CATAAGTACA AGGTTAAACA GGCTTACAAC AAGAACAAGG CGATTACAAT GAAAACCCTG
CGTGAACTAC AGGCGGGTGA TTTTGTAACG CATATTGATC ATGGTGTAGG TGTGTACAGT
GGCTTGCAGA AGATTGAAGT AGGTGGTAAA ATGCAGGAGG CTATCCGTAT TATCTACAAG
AACAATGACC TCTTGTATGT AAACATTAAC TCCCTGCATA AAATCAGCAA GTATTCCGGC
AAAGAAGGTG TTGAACCGCG TGTGAATAAG CTCGGTAGTG ATGCCTGGGA TAAGCTGAAA
GAAAAAGCAA AAACACAGGT TAAGGATATT GCTAAAGACC TGATCCAGTT GTATGCTGCG
CGTAAGGCCC AGACCGGGTT CCCTCACTCG CCGGATACCT ATCTGCAGAC AGAGTTGGAA
GCATCCTTCC TGTATGAAGA TACACCTGAC CAGAGTAAAG CAACTGCCGA CGTTAAACGC
GATATGCAGT CGCCTGCTCC GATGGATCGT CTTGTCTGTG GTGATGTTGG TTTTGGTAAG
ACAGAGATTG CGGTACGTGC TGCATTCAAA TCTATTGTTG ACGGTAAACA AGCTGCTGTA
TTGGTGCCCA CTACCATTCT TGCATTCCAG CACTACAAGA CTTTCTCAGA TCGTCTGAAA
GACTTCCCAT GTACAGTCGA CTATCTTAAC CGTTTTAAAT CGGCAAAAGA AAAGAAGGAA
ACACTGCAAA GATTGGCAGA AGGTAAGATC GATATTATCA TCGGTACACA TGCACTGCTG
AGTAAGGATG TGAAGTTCAA GGATCTCGGT GTAATGGTGG TCGATGAAGA ACAGAAATTT
GGTGTAGCTG CGAAGGAAAA ACTGAAACAA CTGAAGATAA ACGTAGATAC GCTGACACTA
ACGGCAACAC CTATACCGAG AACATTGCAG TTCTCATTAA TGGGTGCAAG AGATCTGTCG
GTGATCAATA CGCCGCCGCC TAACAGGCAG CCGATAGAAA CAGAGGTACA TGTCTTTGAT
CATGACCTGA TCCGTGATGC TATTTATTAC GAAACAGAGC GTGGCGGACA GGTATACTTT
GTATACAATC GTGTGAAAGG TTTGGGTGAA ATGAGCAGTC TGATCAAAGG TCTTTGTCCT
GATCTTTCTA TTGCCACTGC ACATGGTCAG ATGGAAGGTC ATCAGCTGGA AGAGGTGATC
CTTGACTTTA TCGATCGTAA ATATGATGTA CTGGTATGTA CCAATATCGT GGAAAGCGGT
GTGGACATTC CAAATGCAAA TACTATCATC ATCAACAATG CACATCACTT CGGATTGAGT
GATCTGCATC AGTTGCGTGG ACGTGTGGGT CGTAGCAATA AAAAAGCATT CTGTTATCTG
CTGGCGCCAC CTATCAGTAC ATTGCCCGGC GATAGCCGCA AGCGCCTGCA AACGCTGGAA
CAGCATAGTG AGCTTGGTAG TGGATTCCAG ATCGCTATGC GTGACCTTGA TATCCGTGGT
GCAGGTAACC TTTTAGGAGG TGAACAAAGC GGATTTATGG CAGAGATAGG CTTCGATATG
TATCAGAAGA TTCTTGACGA AGCAATCCGT GAATTGAAGC AGAATGAATT CCGTGATCTC
TTTAAAGATC AGCTGGAAGA GAAGAAAGAC TTTGTGAGTG ACTGTACCAT CGATACTGAT
CTGGAGATCC TGATCCCTGA CAGTTATGTG GAAAGTATAC AGGAACGTCT GAACCTCTAC
CAGGAGCTCG ATAACATTAC GCTTGAAAGC AAGTTACAGG CATTTGAAGT TGAAATGCAG
GACCGTTTCG GGCCTGTTCC GGAGCCGGTA AAAGACCTTT TCTGTATGAT CCGTTGTCGT
TGGATGGCGA TCAAGCTTGG CTTTGAAAAA ATGATGCTGA AAGAAGGGAA ATTACGTTGC
TATTTTATTA ACAATCCTGA TTCTCCATAT TTCGAATCAC CGACGTTTAA TCATATTCTT
ACTTACCTGC AAACAAGAGT AAACAATGCG AAACTCAGAC AGGTAGGAAA GAACTTTATG
CTGGTAGCAG ATAAGATAGT GACGATGAGT GATCTGTATG ACTTCCTGCA TAATATGGAA
GACGCAAGAA ACGAGAAGTA A
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| Protein sequence | MNIQAVLQLY QRDSRLQQLV KGIHLSDPQY FQLTGLTGSA TTFVAAGAWE MANSVNHLFI
LNDREEAAYF HNDLESITQG LDIFYFPDSF KKAGFFNEIN SSHSMLRTEA LMKFSGNAVH
KKVLVTYPEA LWEKVAASVA YTGNMVQLKV GDVLKVDDLL NKLVSWGFEF TDFVYEPGQY
ALRGGILDIY SFGNEKPYRI ELFGEDIDSI RLFDPESQLS ERKLNQVTLI ANMDTQGLKH
EKASLLGFLP ENTIVWMKDP GYVQDVILQL EERLDAFLQT GQQVKVGDDD TIALSEADFV
KAHAMMQDLL RRHCIVFGSR QWWEDTNRAF IPLNFETQEQ PVFNRQFEML IKDLDAHNKN
KYTLFIFAEN ARQLERLRSI FEDLKADFTF FPIPSPVSHG FIDHSLKLVC YTDHQIFQRY
HKYKVKQAYN KNKAITMKTL RELQAGDFVT HIDHGVGVYS GLQKIEVGGK MQEAIRIIYK
NNDLLYVNIN SLHKISKYSG KEGVEPRVNK LGSDAWDKLK EKAKTQVKDI AKDLIQLYAA
RKAQTGFPHS PDTYLQTELE ASFLYEDTPD QSKATADVKR DMQSPAPMDR LVCGDVGFGK
TEIAVRAAFK SIVDGKQAAV LVPTTILAFQ HYKTFSDRLK DFPCTVDYLN RFKSAKEKKE
TLQRLAEGKI DIIIGTHALL SKDVKFKDLG VMVVDEEQKF GVAAKEKLKQ LKINVDTLTL
TATPIPRTLQ FSLMGARDLS VINTPPPNRQ PIETEVHVFD HDLIRDAIYY ETERGGQVYF
VYNRVKGLGE MSSLIKGLCP DLSIATAHGQ MEGHQLEEVI LDFIDRKYDV LVCTNIVESG
VDIPNANTII INNAHHFGLS DLHQLRGRVG RSNKKAFCYL LAPPISTLPG DSRKRLQTLE
QHSELGSGFQ IAMRDLDIRG AGNLLGGEQS GFMAEIGFDM YQKILDEAIR ELKQNEFRDL
FKDQLEEKKD FVSDCTIDTD LEILIPDSYV ESIQERLNLY QELDNITLES KLQAFEVEMQ
DRFGPVPEPV KDLFCMIRCR WMAIKLGFEK MMLKEGKLRC YFINNPDSPY FESPTFNHIL
TYLQTRVNNA KLRQVGKNFM LVADKIVTMS DLYDFLHNME DARNEK
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