| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0408 |
|---|
| Symbol | |
|---|
| ID | 8356514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 490894 |
|---|
| End bp | 492846 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644962554 |
|---|
| Product | legume lectin beta domain protein |
|---|
| Protein accession | YP_003120107 |
|---|
| Protein GI | 256419454 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.223711 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGAG CATTGTTGCT TATAGCAGGA TTGTGCTGGC TTCTTTTTTT ATCCCATACA
ACGGTACATG CTCAACTACA GACCCCATAT ATATTGAATG GGGCTGCGAC ACAACGGACT
TGTAATTGTT ATGTGCTTAC AGAAGATCAG GGTACTTCGA GCGGTACAGT ATGGAATAAG
AATAAGATCA GCCTGAATAA TTCCTTTGAT TATTATTTTG ATGTCAACCT GGGTTGTAAA
GATGAAAACG GTGCAGATGG CATCGGTTTT ATTCTGCAAA CACAGGGTAC AAACCTTGGG
GCCACCGGTC AGGGCATAGG CTTTCAGAAT ATCAGACCTT CCCTTGGCGT TATTATAGAT
ACCTGGCAAA ACATGGATGA CGGTGATCCT TACTACGATC ACGTATCTAT CCAGATTAAC
GGTGATATCT CACACAGCAG TACCAATAAC CTGGCAGGAC CTGTTACAGC ACTGGCAAAT
AATGACAACA TCGAAGACTG TAACTGGCAC ATCTTTCATA TTAAATGGAA TGCGGCCACC
AAACAACTGG AAGTGAGTAT GGACGACTCC CTGCGTTTAA GCATACAGAA AGACCTGGTC
GCAGAGGTAT TTGGCGGCGA CCCGATGGTA TTCTGGGGTT TTGGCGCCGC AACAGGTGGA
GCATCTAACA AACAACAGTT CTGTGCCGCC TTGCGCCCCC AGCTGGAATT TAACAGCAAC
CAGCTCTTCT GTGACGGCTC CGCCATTGTC TTTGCGGACA ACTCAAAATC ATTTGGCAGC
ATCACACGCT GGCGCTGGGA TTTCGGAGAT GGTACAACCG CTTCCGTACC TGATCCTCCT
CCACATCAAT ACGCTAAACC CGGCAGGTAC CAGGTAAAAC TTCTCATAGA AGACAACAGT
GGCTGTGTAT CAGATACCAT GAAACAAGAC CTTACAATTG GTAGTTATCC TATCCCTGAT
TTCTCTTATG ACTCACTTTG TACGAGCCGT ATCGTTAGTA TCACGGATAA AACAACCCTG
GATGTAGGCA CATTGCGTCA ATGGGTATGG GATATGGGCA ACGGTACGAT TGAGACCACC
CAAACACCTG TATTCAGTTA TGATAGTACC GGCACTTACA CTGTCAGGCT GCAGGTGACA
AGTTCCGAAG GCTGTGGCGC AGAGATCTCC AAACCTGTCA ATGTATATCC GACACCTGCG
ATTGCAGCTG CAGGAGAAAG CGTGTGTATC GGAGAACCTG TTGCATTCAC AGGCACGGAT
TTAACACCTT CCATTCCGTT GTCGCAATGG TACTGGGATA TGGGGAACGG ACAACAGCAG
ACAGTACAAA ACATCGATTA TATCTATCCG GATGGGGGTG AATATGAAGC ATCCCTACAT
ACACTCAGCA CCAAAGGATG CTTCTCAGAT ACCGCTTATG TGCCGGTAAC TGTTTCGGAT
ATCAAACTGG ATCTGGGTAA CGATACACTC ATTGCGCGTG GTCAGCCATT ACAGTTACAG
GCAGTCACCG GCGGTAATAA TCTTCAGTTC AGCTGGACAC CTGACAACGG ACTCACAGAT
CCTTATACAG CTAATCCGAC AGCGATACTG AATAATGATC AGACCTACTA TCTGACAGTA
ACTTCTCCAC AGGGTTGCAT TGATATGGAC ACTATACACA TTAAAGTGTA TGCAGGTCCG
GACTTCTATG TACCAACTGC ATTTTCTCCT AACAATGATG GACAGAATGA TATTTTCCGG
GCTATTTCTC CCGGTGTTGC AACACTTGAT TTCTTCTGTG TATGGAACAG ATGGGGACAG
GAAGTATTCC GTACACAATC GCTTCTGACC GGCTGGGACG GCAGCTACAA AGGCCAGCAG
ATGCCTGCAG GAACTTATGT GTGGATGATA CAGGGAACGG ATTACAGAGG GAACGTATTT
AACAGAAGAG GTACAGTGAC AATTGTGAGA TGA
|
|---|
| Protein sequence | MTRALLLIAG LCWLLFLSHT TVHAQLQTPY ILNGAATQRT CNCYVLTEDQ GTSSGTVWNK
NKISLNNSFD YYFDVNLGCK DENGADGIGF ILQTQGTNLG ATGQGIGFQN IRPSLGVIID
TWQNMDDGDP YYDHVSIQIN GDISHSSTNN LAGPVTALAN NDNIEDCNWH IFHIKWNAAT
KQLEVSMDDS LRLSIQKDLV AEVFGGDPMV FWGFGAATGG ASNKQQFCAA LRPQLEFNSN
QLFCDGSAIV FADNSKSFGS ITRWRWDFGD GTTASVPDPP PHQYAKPGRY QVKLLIEDNS
GCVSDTMKQD LTIGSYPIPD FSYDSLCTSR IVSITDKTTL DVGTLRQWVW DMGNGTIETT
QTPVFSYDST GTYTVRLQVT SSEGCGAEIS KPVNVYPTPA IAAAGESVCI GEPVAFTGTD
LTPSIPLSQW YWDMGNGQQQ TVQNIDYIYP DGGEYEASLH TLSTKGCFSD TAYVPVTVSD
IKLDLGNDTL IARGQPLQLQ AVTGGNNLQF SWTPDNGLTD PYTANPTAIL NNDQTYYLTV
TSPQGCIDMD TIHIKVYAGP DFYVPTAFSP NNDGQNDIFR AISPGVATLD FFCVWNRWGQ
EVFRTQSLLT GWDGSYKGQQ MPAGTYVWMI QGTDYRGNVF NRRGTVTIVR
|
|---|
| |