| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0403 |
|---|
| Symbol | |
|---|
| ID | 8356509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 482567 |
|---|
| End bp | 484546 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644962549 |
|---|
| Product | DNA gyrase, B subunit |
|---|
| Protein accession | YP_003120102 |
|---|
| Protein GI | 256419449 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAG AATTAGTGCA AGCACCTACC CCTGCCAGCA GTGGCTATGA TGCGGGTAGT
ATACAGGTAT TGGAAGGCCT GGAAGCGGTG CGCAAGCGCC CGGCCATGTA TATCGGCGAC
ATTGGTGTCA AGGGGCTGCA TCACCTTGTA TATGAGGTGG TGGACAACTC CATCGATGAA
GCCCTTGCCG GTTACTGTAA AAATATCAGT GTAACTATCT GTGAAGATAA CTCCATCCTG
GTAACGGATG ACGGTCGTGG TATCCCAACC GGAATGCACC CTAAAGAAGG ACGTTCCGCA
CTGGAGGTAG TAATGACAGT GTTACACGCT GGTGGTAAAT TCGATAAAAA TACATATAAA
GTATCCGGTG GTCTGCACGG AGTGGGTGTG AGTTGCGTAA ATGCACTCAG TGACAAACTC
CATGTAACCG TACGCCGCGA AGGAAAATTA TTTGAGCAGG AATACCAGCG CGGTGTACCG
CAATATGCGG TTCGCGAAAT CGGTACCTCC GACTCAACCG GTACGACCGT TCACTTCAAA
CCAGATAATG AGATCTTCAA GGAAACCATC TACAACCGTG AGATCCTGGC TGGCCGTCTG
CGTGAACTGG CTTACCTGAA CCGTAAGATC AAAATTACCC TGACTGACGA CCGTGAAAAG
GACGAAGCAG GTAATTCTGT CACTGAAACT TTCTACAGCG AAGGCGGTAT CATCGAATTC
GTACAGATGC TGGATCGTAA CGGCCGTCGT AATGGTCTGT TGCCTGATCC AATCTTCATC
GAAGCACACG ACGCAAGCAG CAACGTGGCC GTTGAAGTAG CAGTGATCTA TAACGACTCT
TTCAGTGAGA ATATCTTCTC CTACGTCAAT AACATCAACA CGATCGAAGG TGGTACACAC
GTAGCAGGCT TCCGCCGTGC GATAACCCGT ATCTTCAAGA GCTATGGTGA TAAGAACAAA
ATGTTCGAAA AAACCAAGAT CGAAGTAACA GGTGATGACT TCCGTGAAGG TCTGAGCGCT
ATCATCAGCG TAAAAGTACC TGAACCACAG TTCGAAGGCC AGACCAAAAC CAAACTCGGT
AACTCCGATG TAATGGGGGT TGTGGACAGT TCCGTAGCAG CCGTACTGGA TGCCTACCTG
GAAGAACATC CCCGCGAAGC CAAGATCATT ATCAATAAAG TGGTACTGGC AGCACAGGCG
CGTGAAGCAG CCCGTAAAGC ACGCCAGATG GTACAGCGTA AGAGCGTACT GAGTGGAAGC
GGCTTGCCTG GTAAACTGGC TGACTGCTCT GAAAATGATC CTGAAAAATG TGAACTGTAC
CTGGTAGAGG GTGACTCCGC AGGTGGTACG GCTAAACAAG GACGTAACCG TAGCTTCCAG
GCGATCCTGC CGCTCAGGGG TAAAATCCTG AACGTGGAGA AAGCCATGGA GCATAAGATA
TATGAGAATG AGGAGATTAA AAACATCTTC ACCGCACTTG GTGTAACCAT CGGTACGGAA
GAAGATGACA AAGCCCTCAA CCTCTCCAAA CTGCGCTATC ACAAACTGAT CATCATGACG
GATGCTGACG TGGATGGTAG TCACATCGCT ACACTGATCC TCACCTTTAT CTTCCGTTAT
ATGAAGGCAA TGGTTGAACA GGGTTATGTG TACATCGCGC AGCCACCACT TTACCTGGTG
AAAAAGAGTA AAGAACAGAT CTACGCATGG ACTGAAGAAG ACCGTAAAGC AGCTATCGCT
AAGATCGCAG GCGGTAAAGA AGACAGCGTA ACGATCCAGC GTTATAAAGG TCTTGGTGAG
ATGAACGCAG AACAGCTGTG GGAAACTACC ATGAACCCGG ATAACCGTAC CCTGAAACAG
GTAACCATCG AAAGCGCTGC AGAAGCAGAT CGCGTATTCA GTATGCTGAT GGGTGATGAA
GTTCCTCCAA GAAGGGAATT CATCGAGTCA CATGCGAAAT ATGCGAAGAT CGATGCATAA
|
|---|
| Protein sequence | MSEELVQAPT PASSGYDAGS IQVLEGLEAV RKRPAMYIGD IGVKGLHHLV YEVVDNSIDE
ALAGYCKNIS VTICEDNSIL VTDDGRGIPT GMHPKEGRSA LEVVMTVLHA GGKFDKNTYK
VSGGLHGVGV SCVNALSDKL HVTVRREGKL FEQEYQRGVP QYAVREIGTS DSTGTTVHFK
PDNEIFKETI YNREILAGRL RELAYLNRKI KITLTDDREK DEAGNSVTET FYSEGGIIEF
VQMLDRNGRR NGLLPDPIFI EAHDASSNVA VEVAVIYNDS FSENIFSYVN NINTIEGGTH
VAGFRRAITR IFKSYGDKNK MFEKTKIEVT GDDFREGLSA IISVKVPEPQ FEGQTKTKLG
NSDVMGVVDS SVAAVLDAYL EEHPREAKII INKVVLAAQA REAARKARQM VQRKSVLSGS
GLPGKLADCS ENDPEKCELY LVEGDSAGGT AKQGRNRSFQ AILPLRGKIL NVEKAMEHKI
YENEEIKNIF TALGVTIGTE EDDKALNLSK LRYHKLIIMT DADVDGSHIA TLILTFIFRY
MKAMVEQGYV YIAQPPLYLV KKSKEQIYAW TEEDRKAAIA KIAGGKEDSV TIQRYKGLGE
MNAEQLWETT MNPDNRTLKQ VTIESAAEAD RVFSMLMGDE VPPRREFIES HAKYAKIDA
|
|---|
| |