| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0376 |
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| Symbol | |
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| ID | 8356481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 452423 |
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| End bp | 454348 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644962522 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_003120076 |
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| Protein GI | 256419423 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.566084 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.993299 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATTA CGCCGGGCCC TCTTTTGGGC AAGATCGAAA CCCCTGCTGA TCTGCGGAAT
CTCAGTAAAG AGCAACTGCA CGAAGTAAGT GAAGAACTCC GCCAGTTCAT TATTGATGTT
GTCAGTGTGC ACGGTGGCCA CTTTGCAGCC AGCCTCGGAG TGGTGGAGCT GTCTGTCGCA
CTACACTATG TTTTTAATAC CCCTTATGAC CAGCTGGTAT GGGACGTAGG TCACCAGGCT
TATGGTCATA AAATCCTGAC CGGCAGAAGA GACGTTTTCC ATACCAATAG AAAATATCAC
GGTATCAGCG GTTTCCCGAA AAGGGATGAA AGCGAGTATG ACACCTTTGG CGTAGGTCAC
TCGTCCACCT CCATCTCAGC AGCCCTGGGT ATGGCGATGG CGTCTAAATA TAAAGGTGAA
ACCGACCGTC AGCACATCGC CGTCATCGGT GATGGCGCCA TGACAGCAGG TATGGCGTTT
GAGGCACTCA ATCATGCAGG TGTTGCCAAT GCCAATGTAC TGATCATTCT CAATGACAAC
TGTATGTCCA TTGACCCGAA TGTAGGTGCA CTGAAAGAAT ACCTGACCGA CATCACAACT
TCTCCTACCT ATAATAAACT GCGCGACGAT GTGTGGAACC TGCTGGGGAA ACTCCCTGTA
GGTAAACGCT TCACCCGTGA CATGGCCTCC AAACTGGAAG CTGGTCTGAA AGGTGTTGTT
TCCAGCTCCA GCAACCTGTT TGAATCGCTC AAACTCCGTT ATTTCGGCCC GATCGACGGT
CATAATATCG TGAAACTGGT TGATACCCTG CAGGATCTGA AAGACATTCC CGGCCCAAAA
CTGCTTCATA TCGTTACCAC CAAGGGTAAA GGCTATGCAC TGGCGGAGAA AGACCAGACC
ACCTGGCACG CTCCGGGCCT GTTTGATAAA ATCACCGGCG AAATCTTTAA GAAACCGGTG
GATAAACCAC AGCCGCCAAA ATACCAGGAC GTATTTGGTC ATACCATCAT CGAACTGGCA
GAGCAGAATA AGAATATCAT GGGTATCACC CCGGCGATGC CTTCCGGCTC TTCCCTGAAA
TTTATGATGG AGAAAATGCC TGACCGCGCT TTCGACGTTG GTATCTGTGA GCAGCATGCC
GTTACCCTTT CCGCCGGTCT GGCTACACAG GGTATGCGCG TATTCTGTAA CATCTACTCT
TCCTTCATGC AGCGCGCCTA TGACCAGGCT TTACATGATG TGGCTATCCA GAAACTGCCG
GTTACTTTCT GTCTGGACCG TGCAGGTCTG GTAGGAGAGG ACGGCCCTAC ACACCATGGC
GCTTACGATA TCGCTTTCAT GCGTTGCGTT CCGAACATGA TCATCAGTTC CCCGATGAAC
GAAGAAGAAC TCCGCAACCT GATGTATACT TCTCAGCTGC CTACCCAGGA ATATCCTTTT
GTGATCCGTT ATCCAAGAGG ACAAGGTGTA ATGCCTGACT GGAAACAGCC ATTTAAAGAG
ATCAAAGTCG GAACCGGCCG CAAAGTGCGT AACGGTAAAG ATATTGCCAT CCTCTCCCTG
GGTCATCCGG GCAACTTTGT CACCGAAGCC TGCAAAGAAC TGCTGGCAGA CGGTCTGCAA
CCAGCCCACT ACGATATGCG TTTTGTGAAA CCACTGGATG AAGCCATGCT GCACGAAATA
TTCAGTCAGT TTGACAAGAT CATCACCGTA GAAGATGCTG CTGTAACAGG CGGATTTGGT
AGCGCTGTAC TGGAATTCAT GGCCGCTAAC GGTTACAAGG CAGATGTGCG TCTGCTGGGT
ATTCCTGACC GTATCGTTGA ACATGGTAAA CCAGACGAAC TGCACCGTGA ATGTGGCTAT
GATGCGACTG GCATCGCTGC TGCTGCACGT GCCATGCTGA AAGAGAAGAT CACTGTTACT
GCCTGA
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| Protein sequence | MNITPGPLLG KIETPADLRN LSKEQLHEVS EELRQFIIDV VSVHGGHFAA SLGVVELSVA
LHYVFNTPYD QLVWDVGHQA YGHKILTGRR DVFHTNRKYH GISGFPKRDE SEYDTFGVGH
SSTSISAALG MAMASKYKGE TDRQHIAVIG DGAMTAGMAF EALNHAGVAN ANVLIILNDN
CMSIDPNVGA LKEYLTDITT SPTYNKLRDD VWNLLGKLPV GKRFTRDMAS KLEAGLKGVV
SSSSNLFESL KLRYFGPIDG HNIVKLVDTL QDLKDIPGPK LLHIVTTKGK GYALAEKDQT
TWHAPGLFDK ITGEIFKKPV DKPQPPKYQD VFGHTIIELA EQNKNIMGIT PAMPSGSSLK
FMMEKMPDRA FDVGICEQHA VTLSAGLATQ GMRVFCNIYS SFMQRAYDQA LHDVAIQKLP
VTFCLDRAGL VGEDGPTHHG AYDIAFMRCV PNMIISSPMN EEELRNLMYT SQLPTQEYPF
VIRYPRGQGV MPDWKQPFKE IKVGTGRKVR NGKDIAILSL GHPGNFVTEA CKELLADGLQ
PAHYDMRFVK PLDEAMLHEI FSQFDKIITV EDAAVTGGFG SAVLEFMAAN GYKADVRLLG
IPDRIVEHGK PDELHRECGY DATGIAAAAR AMLKEKITVT A
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