| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0338 |
|---|
| Symbol | |
|---|
| ID | 8356443 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 400686 |
|---|
| End bp | 402029 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644962484 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003120038 |
|---|
| Protein GI | 256419385 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAGA ATATAAAATT ATTGATCCGC ATATTACCGA TTGTCTTTTT GCTGGTTTCC
TGCAGTGACT TTCTGGATGT GCAACCGAAA GACTCCGTTT CAGATGAAAC GACGATCGTT
GATAAAACCT CTGCGCAGAC AGCTGTACGT GGTATATACC GGCAGTTGGG CGACGATGAT
TATTATGGCG CACTGTTTCA GACGATCGGG TATCTCTCCG GAGATAATAT TCAGTGGACA
GGTTCACAGT CGATTATCCA GCAGTTTATA TCGCATGCGG TAAAGGCGGA TAATACGAAT
ATAGCGACGG CATGGTCGGC CATCTATTCC ACTATCAACC GGGCTAACCA GGTAATTGAT
AAACTGCCGG GTGTAAACGA TGCTACCCTG ACAGCAGATG AAAGAAACGC CCTGCTGGGA
GAGGCTTACT TTGTACGTGC GCTGGCCTAT TTTGACCTGG CCCGTACCTG GGGAGGTGTA
CAGCTGGTCG TGAAAGCGAC TTCCGATATC AATGATACAA AAGGGCTGAA ACGCAGTACG
CTGGAGCAGA CTTATGCCCA GGTACTGAAA GATCTGCAGA TGGCGGAACC GCTTTTACCT
GAGACTACTA ACCGCTATCG TGCCACCCGT AAAACTGTAT GGGCATTGTT AGCCCGTTTT
CACCTCTATC AGCGCAATTG GGAACAGGCA GAGGTATATT CCTCCAGATT GATACAAGAC
GCGAAATACA GGCTTCTAAA GCCCTATAGC GCGTTCTTTG CCAACAACGT GGTGGCGACC
GACGAATCCA TCTTCGAAAT CTCCTACAGC GCCACTAATA CGAATGCACA TCGTGGCTAC
TGGCAGCCCC CTGCCAATAA TGGAACCCGT CAGTGGGCGC CTAATGACGC TTTTATCGCA
TTGATCAATA ATCCGGCTGT GGGCGGTAAC AGAAACGCGG CTGTGGCTAT TACGAACCAG
GGGCTCTGGT ATGGCAATTT CTATTATCGC AGTCCGGCGA CAGATCCGGC CTATGTCCTG
CGTATCGCAG AACAATACCT GATCAGGGCG GAGGCACGTG CACAACAAGG TAATCTGTCT
GGGGCGCTGG CTGACCTGGA TGCGGTAAGA GACAGAGCAG GACTGAGCGG GAGTACGGCA
GTATCACAGG GTGAAATACT CCTGGCGATC GAAAATGAGC GCAGACTGGA GTTCGCATTT
GAACCTCACC GCTGGTACGA CCTGGTAAGA ACAGGACGTG CAGGTACTGT ATTGGGTGTT
ACGGACGAAC GCCGATATGT AATGCCGATA CCCGCTATCG AACTGAGTGC AGACGATGCA
CTGGAACCTA ATCCGGGTTA CTAA
|
|---|
| Protein sequence | MQQNIKLLIR ILPIVFLLVS CSDFLDVQPK DSVSDETTIV DKTSAQTAVR GIYRQLGDDD
YYGALFQTIG YLSGDNIQWT GSQSIIQQFI SHAVKADNTN IATAWSAIYS TINRANQVID
KLPGVNDATL TADERNALLG EAYFVRALAY FDLARTWGGV QLVVKATSDI NDTKGLKRST
LEQTYAQVLK DLQMAEPLLP ETTNRYRATR KTVWALLARF HLYQRNWEQA EVYSSRLIQD
AKYRLLKPYS AFFANNVVAT DESIFEISYS ATNTNAHRGY WQPPANNGTR QWAPNDAFIA
LINNPAVGGN RNAAVAITNQ GLWYGNFYYR SPATDPAYVL RIAEQYLIRA EARAQQGNLS
GALADLDAVR DRAGLSGSTA VSQGEILLAI ENERRLEFAF EPHRWYDLVR TGRAGTVLGV
TDERRYVMPI PAIELSADDA LEPNPGY
|
|---|
| |