Gene Cpin_0335 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0335 
Symbol 
ID8356440 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp396238 
End bp397668 
Gene Length1431 bp 
Protein Length476 aa 
Translation table11 
GC content48% 
IMG OID644962481 
ProductFAD dependent oxidoreductase 
Protein accessionYP_003120035 
Protein GI256419382 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000674369 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAATT CATACGACGC TATTGTCATC GGCTCAGGAC CTAACGGACT CGCGGCAGCG 
ATACTCCTGC AACAGCAGGG TTTATCCGTG CTTGTGATAG AAGGCCGTGA CGAGATCGGT
GGAGGTTTAC GATCCAAGGA ATTGACATTG CCGGGATTTA CGCATGATAT CTGTTCTGCT
ATTCATCCTA TGGCGCAGAC GTCGCCTTTC TTTAGCCAGT TGCCGTTGGC GCAGTTTGGC
TTATCTTTTC TCCATCCTGT AGCGGATGCT GCGCATCCTT TTGATGATGG AACGGCGGCC
GTGTTGTATT CTTCCCTGGA GAAAACGGCT GAGTTACTGG GTAGTGACCG TCAGACTTAT
GAGCGGCTGT TTCGTCCCTT ACTACAAGAT TTTAAAGATC TCTCTGAAGA TATACTGGGC
CCTTTGCAGC TGCCGAAACA TCCGTTAACG ATGGCTAAAT TCGGATTGAA GGCATTACCT
TCTGCTATGC ATCTGGCGAA GCGTTTTAAG ACAAGGGAAG CACGTGGATT GTTTGGAGGA
GTGGCTGCAC ATGCGATACA ACCTTTGACA AATATTGCGA CTTCCGCGAT AGGACTGGTG
TTAATGGCGA ATAGTCATGT AAGTGGATGG CCTGCGCCGA AAGGAGGCGC ACAGTCGCTG
GCCAATGCAT TGGGCGCTTA TTTTACTTCA TTAGGTGGAG AGATCGTGAC AGGAAACTTT
GTCAAGGCAT TAAAGGAGTT GCCGCCTTCG AAGGCAGTGT TACTGGACGT TACGCCGAAG
CAGTTATTAC AGATTGCGGG CGAAAGATTT ACTTCATTTT ATAAATGGCA GCTGAAACGC
TATAAATACG GGATGGGCGT ATTTAAGGTA GACTGGGCGC TGGATGGCCC CGTTCCTTTT
ACAGCGGCAG CTTGCAGAGA AGCAGGTACG ATTCACCTGG GTAATACCAT TGAGGAGATA
GCCACCAATG AGCAACGTAC CGTGGATGGT CAGCATCCTG AATTACCTTA TACCTTGTTT
GTACAACATA GTATTTTTGA TAAAACCCGG GCTCCGGAAG GCAAGCATAC GGCCTGGGGC
TATTGTCATG TACCGAATGG TTCTACCAGA GACATGACTG CCGCGATTGA AAACCAGGTG
GAGCGTTTTG CACCCGGTTT TAAGGATCTG ATTATCGGCA GGCATGTGAT GAATACCGCC
GATGTAGAAG CATATAACCC TAATTATATC GGGGGAGATA TTAATGGTGG TCTCCTGGAT
ATTACACAAC TCTACACCCG CCCAGCTTTG AGATGGTCAC CCTATACGAC GCCTGCTAAG
GGCATTTACG TTTGTTCCTC TTCAACACCT CCCGGTGGAG GTATTCATGG TATGTGTGGT
TATCATGCGG CGAAGAAGGC ATTAAAAGAT GTTTTTGGCG TCCGCCTGTA G
 
Protein sequence
MKNSYDAIVI GSGPNGLAAA ILLQQQGLSV LVIEGRDEIG GGLRSKELTL PGFTHDICSA 
IHPMAQTSPF FSQLPLAQFG LSFLHPVADA AHPFDDGTAA VLYSSLEKTA ELLGSDRQTY
ERLFRPLLQD FKDLSEDILG PLQLPKHPLT MAKFGLKALP SAMHLAKRFK TREARGLFGG
VAAHAIQPLT NIATSAIGLV LMANSHVSGW PAPKGGAQSL ANALGAYFTS LGGEIVTGNF
VKALKELPPS KAVLLDVTPK QLLQIAGERF TSFYKWQLKR YKYGMGVFKV DWALDGPVPF
TAAACREAGT IHLGNTIEEI ATNEQRTVDG QHPELPYTLF VQHSIFDKTR APEGKHTAWG
YCHVPNGSTR DMTAAIENQV ERFAPGFKDL IIGRHVMNTA DVEAYNPNYI GGDINGGLLD
ITQLYTRPAL RWSPYTTPAK GIYVCSSSTP PGGGIHGMCG YHAAKKALKD VFGVRL