| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0331 |
|---|
| Symbol | |
|---|
| ID | 8356436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 388247 |
|---|
| End bp | 391036 |
|---|
| Gene Length | 2790 bp |
|---|
| Protein Length | 929 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644962477 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003120031 |
|---|
| Protein GI | 256419378 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.590564 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAC TTATAACACC CAAACCGTCT ATCCCCCGGG ACCAGGAACT TCAGATACGT
TTTGCATTAC ATGCTGCCGG GATCGGTACA TGGGATGTAG ATATGGTCAA CCGGCAGATC
GTACTGGATG AACGTTGCAG GGCTTTATTC AGACTGGCAG ACGACGAAAC GCCTACTTAC
GAGACCGTCA TACGGCATAT TCACTACGCA GATCAGGACT CCGTACGGCA GACGGTCAGA
CAGGCATTAC AGCCGCAATC TGATCATCAG TTCAGCGTCC GGTTCAGAAG CATTGCAAGT
GACAACAACA ATACTTTATG GCTGAATGTA AAAGGACAGG CTTACTTTGA TAACGAAGGA
AAAGCCATCC GCCTCTCCGG CATCAGCCAG GATATTACCG CAGAAATAGC CGCCCATGAG
AAGGCAGAAG CAGCAGAAAG ACTGGCCAGT CTCGCTGTAG AAGGTTCTGA CGCCGGTATC
TTTACCGTCG ATCTGAGCAC CGATGATATT GACTTCTCTG CCAATCTTCA ATACATTATG
ACGGGCATAC GGGAACCTGT CGTTAAGAAA CGGAACATAC TGATCAGCCA TATTCACCCG
GATGATGTGC CAATAAGAGA ACGTGCATAT GCAATGGCCG CCCAAACCGG TACCCTGCAC
TATGAAGCAC GTTTCGTATG GGAAGACGGT ACTATTCACT GGGGTAAAGT ACGTGGCAAG
TATTACTATG ATATAAACGG TACCCCCGTA TCACTGTCCG GTATCTGCCT GGATATCACC
CTGCAGAAAG AACAGGACCG CCTGCTCAAA GAAGTTGAAC AACGCTTTGC ACTCTCCTTT
AACAATGCCA CCATCGGCAT GGCCTTCATC GATAGCCAGG CAAAGTTCAA TATGATCAAC
AAAGCCTTTG CAGGTCTATT GGGTTGCACC GCAGAAGAAC TGACCGGCAA AGAATACATC
GAGATCGTAC ATACCGAACA TCAGCAGGAA AATGTACAGC TCTTCGCAGA ACTGATGCAG
GGTAAACGTG ATGTATTCAA TCAGATCAAA CGTTATAGGC TAAGGGATGG CGCCGAACGA
TGGGTACAGG TTAATACAGC CCGTATCACC AGTCAGAACG ATCAGAAAGA AAACATACTG
GTGATCGCTT TTGATATCAG CAACGAAGTA GCCGCCCGCC AGGAACAGCA AAAGCTGCTG
ACACTGGTAG AAAACAGCAG CGACTTTATT GCCGTAGCTA ATCTCGATGG TACCATTACC
TATGTGAATG ATGCCGGTAT GAAATTACTG GGCATGGGCC GAAAGAGCTC CACCATCACG
CGTAATATAA GGGATATCTT TACCCTCGAA CACCTGGTAC ATCTCGAAAA ACATATCCTT
CCTGCTGTCT TTATAGAAGG TAAATGGACA GGAAGACAAT ACTATACACA ACAGGAAACC
GGCGAACAGA TTCCTTTTCA TACCAATGCT TTCCGGCTCG ACAGTCCTAT GAGCGGAGAA
CCCATTGCTG TTGCCTGCGT AGCCAGAGAC CTGAGAGCAG AACAGGAAGT GCAACAGGCA
CTCCTGGAAA GTGAATACCG GTTCCGCTCT CTCGTAGAAG AAGCGCCTGT AGCCACCGCA
CTCTTTGTAG GTCCTGAACT GGTCATAGAA GTCGCTAATG AACCGATGAT CAATGTATGG
GGCAAAGGAA GATCCGTTCT CGGCAAAAAA CTGTCTGATG CAGTACCTGA ACTGAAAGAA
CAGCCTTTCC TGAAAATACT GGATGAGGTA TATAGAACCG GTATCGCCTA TCATGAAAAA
GAAGCCAGGG CAATCCTTGT CATCAATGGC AAACCGCAAA CATTCTATTT CAACTATACT
TACAAACCAT TGCTGAATGC AATGGGAGAA GTCTTCGCGA TTGTAGACAT GGCCATCGAT
GTAACCGAAC AGGTACTGGC CCGTAACAAA CTACTGGAAC ATCAGGGTAA CCTGGAACTG
GAAGTGGCTG AAAGGACAGA AGAACTTGCC GCCTCCAATG AGGAACTGGC AGCCATGAAC
GAAGAATTAC AGGATGCCAA CGCCAATCTC GTCAGATCTA ATCAGGAGCT GGAACAATAC
GCATACGTGG CCAGTCATGA CCTGCAGGAG CCTTTGCGCA AGATCCGCAT TTATGCCGAC
CTGCTGAACC GTTATGAAGA CCTCGTTCCG GATCATAAGA AGCTGGTGGA AAAGATCAAT
CAGTCGTCAG AAAGAATGTC GATGCTGATC AAAGACCTGT TGGAGTTTTC CAGACTGCTG
GAGAAAGGAA ATATGACGCG GCCAATAGAC CTCACCTTCA TCCTACAAAG CGTCATCAGC
GATTTCGAAC TGATCATAGA AGAGAAAAAT GCAGAGATCC TGATCGGACC ACTCCCTACT
ATACAGGGTA TTCCGCTACA GATCAACCAG CTGTTCTATA ACCTTATGAG TAATGCCTTG
AAGTTTACAC AGCCAGGCAT CCGCCCCGTA ATAGAAATCG GCGCAAAAAT CATAACATCC
GATATGGCAG GCAGCTACCT CGGCAAATCC GAGCGATACA GACAATACTT TGATATCACC
TTCAGGGATA ATGGCATCGG CTTCGAACAG AAATATGCCG AACAGATCTT CGAAGTATTC
AAACGCCTGC ATAACCGCGC CATGTTTCCC GGTTCCGGTA TCGGATTGTC TTTATGCAGA
CGCATTGTGG CCAATCACGC AGGCCACCTG TTTGTAGAGT CTGCGCCTGG GAAGGGGACC
CTCTTTCATA TTATCATTCC CGGATTATAA
|
|---|
| Protein sequence | MSELITPKPS IPRDQELQIR FALHAAGIGT WDVDMVNRQI VLDERCRALF RLADDETPTY
ETVIRHIHYA DQDSVRQTVR QALQPQSDHQ FSVRFRSIAS DNNNTLWLNV KGQAYFDNEG
KAIRLSGISQ DITAEIAAHE KAEAAERLAS LAVEGSDAGI FTVDLSTDDI DFSANLQYIM
TGIREPVVKK RNILISHIHP DDVPIRERAY AMAAQTGTLH YEARFVWEDG TIHWGKVRGK
YYYDINGTPV SLSGICLDIT LQKEQDRLLK EVEQRFALSF NNATIGMAFI DSQAKFNMIN
KAFAGLLGCT AEELTGKEYI EIVHTEHQQE NVQLFAELMQ GKRDVFNQIK RYRLRDGAER
WVQVNTARIT SQNDQKENIL VIAFDISNEV AARQEQQKLL TLVENSSDFI AVANLDGTIT
YVNDAGMKLL GMGRKSSTIT RNIRDIFTLE HLVHLEKHIL PAVFIEGKWT GRQYYTQQET
GEQIPFHTNA FRLDSPMSGE PIAVACVARD LRAEQEVQQA LLESEYRFRS LVEEAPVATA
LFVGPELVIE VANEPMINVW GKGRSVLGKK LSDAVPELKE QPFLKILDEV YRTGIAYHEK
EARAILVING KPQTFYFNYT YKPLLNAMGE VFAIVDMAID VTEQVLARNK LLEHQGNLEL
EVAERTEELA ASNEELAAMN EELQDANANL VRSNQELEQY AYVASHDLQE PLRKIRIYAD
LLNRYEDLVP DHKKLVEKIN QSSERMSMLI KDLLEFSRLL EKGNMTRPID LTFILQSVIS
DFELIIEEKN AEILIGPLPT IQGIPLQINQ LFYNLMSNAL KFTQPGIRPV IEIGAKIITS
DMAGSYLGKS ERYRQYFDIT FRDNGIGFEQ KYAEQIFEVF KRLHNRAMFP GSGIGLSLCR
RIVANHAGHL FVESAPGKGT LFHIIIPGL
|
|---|
| |