Gene Cpin_0323 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0323 
Symbol 
ID8356428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp371461 
End bp373884 
Gene Length2424 bp 
Protein Length807 aa 
Translation table11 
GC content48% 
IMG OID644962469 
Productglycoside hydrolase family 3 domain protein 
Protein accessionYP_003120023 
Protein GI256419370 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1472] Beta-glucosidase-related glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000125133 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATGA AAAAATTCGC CGGTAACCGT AGTCATTTTA TGCTTTGCAT TGCAATGCTC 
GGTCTTGGCA CTCAAGCCTT CGCGCAGGTC AAAAAGACCT CCACTACTTC AGTTGTCTAC
AAAAATGCAT CAGCACCGGT TGATGCCAGG GTGAAGGATC TCCTGAAAAG AATGACACTG
GAAGAAAAGG TAGGTCAGCT CTGTACCTTG CTGGGATGGG AGATGTATGA CAAAAAAGGC
GACTCCGTAG GCGTCAGTGA CAAGTTTAAA TCTGTAATGT CCAAAAGGTA TATCGGCAGT
TTCTGGGCTA CGCTGAGGGC CGATCCATGG ACGCAAAAGA CATTAGTGAC CGGCTTATCG
CCTAAACAGG CAGCTATCGC AACCAATGCC CTGCAAAAGT ACATGATGGA AAATACCCGC
CTGGGTATTC CATTACTGCT GGCAGAAGAA TGTCCGCATG GACATATGGC GATCGGTACG
ACCGTCTTCT CAACGTCTAT CGGTCAGGCC AGTACCTGGG ACCCTGCGCT CATTCAGGAA
ATGGCTGGTG CCATTGCAAA AGAAGCACGC GTACAGGGAG CCCATATCGG TTATGGCCCC
GTGCTGGACC TGGTACGTGA ACCACGCTGG TCCAGACTGG AAGAAACTTA CGGGGAAGAT
CCATACCTGA TCAGTCAGAT GGGTATCTCT ATGGTAAAAG GTTTCCAGGG TAATAGTATC
GGCAGTGGCA GCAATGTCAT TTCTACGCTG AAGCATTTTA CCGCTTATGG TTCTCCGGAG
GGTGGTCACA ATGGCGGTAT TGCGCTGACA GGTCTGCGTG ACCTGTACTC TTCCTACCTA
CCTCCATTCC AGGCGGCAGT GAAGGCTGGT GCACTGTCTA TTATGGCTTC TTATAACTCT
ATTGATGGTA TACCGTGCAG CTCAAATAGC TTCCTGTTGA AAGATGTACT GGTAAAACAA
TGGGGCTTCA GCGGCTTCTC TGTATCTGAT CTCGGTGGTA TTCCAGGCGT ACGTTCTACA
CACCATATAG CCGCAACGAT GGAAGAAGCA GCTACGCTGG CAATTAACGC CGGACTGGAT
GCAGACCTGG GTGGTGAAGC ATATGGCGAT GCATTGATCA AAGCTGTGAA CAATAAGAAA
GTGACAATGA CAACCCTGGA TACAGCGGTA GCACATGTAC TCAGACTGAA ATTCACTATG
GGACTTTTCG AAAATCCATA TGTAGATGTG GATGTAGCAG AGAAAACCGT AGGTACAGCA
GCCAACAGGG CGTTATCCAA ACGTGTAGCA GCTGAATCTA TCGTGCTGAT GAAAAACGAG
AACGGCCTGT TGCCATTGCA AAAAACGATC AAAAACCTGG CTGTAATAGG GCCTAACGCA
GATAATATCT ATAACCAGTT AGGTGATTAT ACCGCTCCGC AGCCACAGGA AAAAATAGTA
ACGGTACTGG AAGGTATCAA AGCAAAAGTA TCTGCTGATA CTAAAGTAAC ATATGTCAAA
GGTTGTGCGA TCCGTGACAC CGCACACGCA AATATCAGTG CTGCTGTAGC TGCTGCGCAA
CAGGCAGACG CAGTAGTGAT CGTACTTGGC GGTTCCAGCG CACGTGACTT CGAAACAACC
TTCCAGAGCA CCGGCGCCGC TGAAGTAAAA GCTGCAGAAG TAGCCGTAAG TGATATGGAA
AGTGGCGAGG GTTACGACAG AGTAAGTCTC GACCTGATGG GTTTACAGTC AAGGTTACTG
GAAAGCATCG TCGCAACCGG CAAACCAGTT GTATTGGTAC TGATCGAAGG TCGCCCACTC
AATATTAACT GGGCCGCTAA AAACGTACCT GCCATCGTAA ATGCGTGGTA TCCTGGTCAG
GAAGGTGGTA ACGCTGTCGC GGATGTACTC TTCGGCGATT ACAATCCTGC CGGCCGTTTA
CCTGTATCCA TCCCTAAATC TGTGGGTCAG CTGCCTGTCT ACTACAACTA CAAGAGTGCG
GCAAGACATG ACTATGTTGA AATGGACGCT AAACCACTCT ACAGCTTCGG CCACGGTCTC
AGTTACGCCA GCTTCGAATA CAAAGACCTG CATTCTGATG TACAGGCCAC TGGTAATAAC
CTGAAAGTAA CAGTGAGTTT CAAACTGAAA AACACAAGTA CTGTAGCAGG CGATGAAGTA
GCACAGCTCT ACATCCGTGA CGATGCCAGT TCTGTAGTGA CTGCTGTAAA ACAACTGAAG
AAATTCCAGC GTGTACACCT GGCGCCAGGC GAACAGAAAG AAATTAAATT CGAACTGTCT
CCTGATGACC TCAGACTACT CAATGTTGAT ATGAAATGGG TGGTTGAACC AGGTACTTTT
ACAATGATGA TAGGAGCTTC TTCTGAAGAT ATCCGCCTGA ATGGAAAATT TGAAGTAAAA
CAACAGGTGG CGTGTAAATA CTGA
 
Protein sequence
MKMKKFAGNR SHFMLCIAML GLGTQAFAQV KKTSTTSVVY KNASAPVDAR VKDLLKRMTL 
EEKVGQLCTL LGWEMYDKKG DSVGVSDKFK SVMSKRYIGS FWATLRADPW TQKTLVTGLS
PKQAAIATNA LQKYMMENTR LGIPLLLAEE CPHGHMAIGT TVFSTSIGQA STWDPALIQE
MAGAIAKEAR VQGAHIGYGP VLDLVREPRW SRLEETYGED PYLISQMGIS MVKGFQGNSI
GSGSNVISTL KHFTAYGSPE GGHNGGIALT GLRDLYSSYL PPFQAAVKAG ALSIMASYNS
IDGIPCSSNS FLLKDVLVKQ WGFSGFSVSD LGGIPGVRST HHIAATMEEA ATLAINAGLD
ADLGGEAYGD ALIKAVNNKK VTMTTLDTAV AHVLRLKFTM GLFENPYVDV DVAEKTVGTA
ANRALSKRVA AESIVLMKNE NGLLPLQKTI KNLAVIGPNA DNIYNQLGDY TAPQPQEKIV
TVLEGIKAKV SADTKVTYVK GCAIRDTAHA NISAAVAAAQ QADAVVIVLG GSSARDFETT
FQSTGAAEVK AAEVAVSDME SGEGYDRVSL DLMGLQSRLL ESIVATGKPV VLVLIEGRPL
NINWAAKNVP AIVNAWYPGQ EGGNAVADVL FGDYNPAGRL PVSIPKSVGQ LPVYYNYKSA
ARHDYVEMDA KPLYSFGHGL SYASFEYKDL HSDVQATGNN LKVTVSFKLK NTSTVAGDEV
AQLYIRDDAS SVVTAVKQLK KFQRVHLAPG EQKEIKFELS PDDLRLLNVD MKWVVEPGTF
TMMIGASSED IRLNGKFEVK QQVACKY