Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0323 |
Symbol | |
ID | 8356428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 371461 |
End bp | 373884 |
Gene Length | 2424 bp |
Protein Length | 807 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644962469 |
Product | glycoside hydrolase family 3 domain protein |
Protein accession | YP_003120023 |
Protein GI | 256419370 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1472] Beta-glucosidase-related glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000125133 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATGA AAAAATTCGC CGGTAACCGT AGTCATTTTA TGCTTTGCAT TGCAATGCTC GGTCTTGGCA CTCAAGCCTT CGCGCAGGTC AAAAAGACCT CCACTACTTC AGTTGTCTAC AAAAATGCAT CAGCACCGGT TGATGCCAGG GTGAAGGATC TCCTGAAAAG AATGACACTG GAAGAAAAGG TAGGTCAGCT CTGTACCTTG CTGGGATGGG AGATGTATGA CAAAAAAGGC GACTCCGTAG GCGTCAGTGA CAAGTTTAAA TCTGTAATGT CCAAAAGGTA TATCGGCAGT TTCTGGGCTA CGCTGAGGGC CGATCCATGG ACGCAAAAGA CATTAGTGAC CGGCTTATCG CCTAAACAGG CAGCTATCGC AACCAATGCC CTGCAAAAGT ACATGATGGA AAATACCCGC CTGGGTATTC CATTACTGCT GGCAGAAGAA TGTCCGCATG GACATATGGC GATCGGTACG ACCGTCTTCT CAACGTCTAT CGGTCAGGCC AGTACCTGGG ACCCTGCGCT CATTCAGGAA ATGGCTGGTG CCATTGCAAA AGAAGCACGC GTACAGGGAG CCCATATCGG TTATGGCCCC GTGCTGGACC TGGTACGTGA ACCACGCTGG TCCAGACTGG AAGAAACTTA CGGGGAAGAT CCATACCTGA TCAGTCAGAT GGGTATCTCT ATGGTAAAAG GTTTCCAGGG TAATAGTATC GGCAGTGGCA GCAATGTCAT TTCTACGCTG AAGCATTTTA CCGCTTATGG TTCTCCGGAG GGTGGTCACA ATGGCGGTAT TGCGCTGACA GGTCTGCGTG ACCTGTACTC TTCCTACCTA CCTCCATTCC AGGCGGCAGT GAAGGCTGGT GCACTGTCTA TTATGGCTTC TTATAACTCT ATTGATGGTA TACCGTGCAG CTCAAATAGC TTCCTGTTGA AAGATGTACT GGTAAAACAA TGGGGCTTCA GCGGCTTCTC TGTATCTGAT CTCGGTGGTA TTCCAGGCGT ACGTTCTACA CACCATATAG CCGCAACGAT GGAAGAAGCA GCTACGCTGG CAATTAACGC CGGACTGGAT GCAGACCTGG GTGGTGAAGC ATATGGCGAT GCATTGATCA AAGCTGTGAA CAATAAGAAA GTGACAATGA CAACCCTGGA TACAGCGGTA GCACATGTAC TCAGACTGAA ATTCACTATG GGACTTTTCG AAAATCCATA TGTAGATGTG GATGTAGCAG AGAAAACCGT AGGTACAGCA GCCAACAGGG CGTTATCCAA ACGTGTAGCA GCTGAATCTA TCGTGCTGAT GAAAAACGAG AACGGCCTGT TGCCATTGCA AAAAACGATC AAAAACCTGG CTGTAATAGG GCCTAACGCA GATAATATCT ATAACCAGTT AGGTGATTAT ACCGCTCCGC AGCCACAGGA AAAAATAGTA ACGGTACTGG AAGGTATCAA AGCAAAAGTA TCTGCTGATA CTAAAGTAAC ATATGTCAAA GGTTGTGCGA TCCGTGACAC CGCACACGCA AATATCAGTG CTGCTGTAGC TGCTGCGCAA CAGGCAGACG CAGTAGTGAT CGTACTTGGC GGTTCCAGCG CACGTGACTT CGAAACAACC TTCCAGAGCA CCGGCGCCGC TGAAGTAAAA GCTGCAGAAG TAGCCGTAAG TGATATGGAA AGTGGCGAGG GTTACGACAG AGTAAGTCTC GACCTGATGG GTTTACAGTC AAGGTTACTG GAAAGCATCG TCGCAACCGG CAAACCAGTT GTATTGGTAC TGATCGAAGG TCGCCCACTC AATATTAACT GGGCCGCTAA AAACGTACCT GCCATCGTAA ATGCGTGGTA TCCTGGTCAG GAAGGTGGTA ACGCTGTCGC GGATGTACTC TTCGGCGATT ACAATCCTGC CGGCCGTTTA CCTGTATCCA TCCCTAAATC TGTGGGTCAG CTGCCTGTCT ACTACAACTA CAAGAGTGCG GCAAGACATG ACTATGTTGA AATGGACGCT AAACCACTCT ACAGCTTCGG CCACGGTCTC AGTTACGCCA GCTTCGAATA CAAAGACCTG CATTCTGATG TACAGGCCAC TGGTAATAAC CTGAAAGTAA CAGTGAGTTT CAAACTGAAA AACACAAGTA CTGTAGCAGG CGATGAAGTA GCACAGCTCT ACATCCGTGA CGATGCCAGT TCTGTAGTGA CTGCTGTAAA ACAACTGAAG AAATTCCAGC GTGTACACCT GGCGCCAGGC GAACAGAAAG AAATTAAATT CGAACTGTCT CCTGATGACC TCAGACTACT CAATGTTGAT ATGAAATGGG TGGTTGAACC AGGTACTTTT ACAATGATGA TAGGAGCTTC TTCTGAAGAT ATCCGCCTGA ATGGAAAATT TGAAGTAAAA CAACAGGTGG CGTGTAAATA CTGA
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Protein sequence | MKMKKFAGNR SHFMLCIAML GLGTQAFAQV KKTSTTSVVY KNASAPVDAR VKDLLKRMTL EEKVGQLCTL LGWEMYDKKG DSVGVSDKFK SVMSKRYIGS FWATLRADPW TQKTLVTGLS PKQAAIATNA LQKYMMENTR LGIPLLLAEE CPHGHMAIGT TVFSTSIGQA STWDPALIQE MAGAIAKEAR VQGAHIGYGP VLDLVREPRW SRLEETYGED PYLISQMGIS MVKGFQGNSI GSGSNVISTL KHFTAYGSPE GGHNGGIALT GLRDLYSSYL PPFQAAVKAG ALSIMASYNS IDGIPCSSNS FLLKDVLVKQ WGFSGFSVSD LGGIPGVRST HHIAATMEEA ATLAINAGLD ADLGGEAYGD ALIKAVNNKK VTMTTLDTAV AHVLRLKFTM GLFENPYVDV DVAEKTVGTA ANRALSKRVA AESIVLMKNE NGLLPLQKTI KNLAVIGPNA DNIYNQLGDY TAPQPQEKIV TVLEGIKAKV SADTKVTYVK GCAIRDTAHA NISAAVAAAQ QADAVVIVLG GSSARDFETT FQSTGAAEVK AAEVAVSDME SGEGYDRVSL DLMGLQSRLL ESIVATGKPV VLVLIEGRPL NINWAAKNVP AIVNAWYPGQ EGGNAVADVL FGDYNPAGRL PVSIPKSVGQ LPVYYNYKSA ARHDYVEMDA KPLYSFGHGL SYASFEYKDL HSDVQATGNN LKVTVSFKLK NTSTVAGDEV AQLYIRDDAS SVVTAVKQLK KFQRVHLAPG EQKEIKFELS PDDLRLLNVD MKWVVEPGTF TMMIGASSED IRLNGKFEVK QQVACKY
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