Gene Cpin_0276 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0276 
Symbol 
ID8356381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp326874 
End bp327704 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content45% 
IMG OID644962422 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003119976 
Protein GI256419323 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAATC AAAAAGTGTG GTTAATCACT GGCAGCTCAC AAGGACTCGG CCTGGCAACT 
ATCCGATATT TGTTAAATAA AGGACAAATT GTTTTTGCAA CGACTCGCGA TAGCACACGA
TTTAGCAGGG ACTTATTTGA ACATCCCCAC TTTCATGCAA TCGCCCTGGA TCTTACCAAA
GAGGAGGAAG TCAAAATGGC CATTGGTGAT GTGTATAAAA AGTACCAACG GATTGATGTA
CTGGTAAATA ATGCCGGTTA CGGTTTTGTT GGCGCCGTCG AGGAAGCTTC CGTGCAGGAA
ATACATCAGG TAGTCGACAT TAACGTACAT GCCACTATCC GAATGATCAG GCATGTGTTA
CCATATATGC GTGGACAGAG AAACGGACAT ATCATCAATA TCTCATCTAT GGCAGGTCTT
ATCAGTTCCG CGGGTTGGGG TATTTATAAT CTTACCAAAT ATGCAGTAGA AGGGTTTTCC
GAAGCGCTGT ACCATGAATT AATACCCTTA GGCATTCATG TAACCATTCT TGAACCTGGC
GCCTTCCGTA CCCGCTTCCT GGCAGGATCA CTAACCACTG CTGCAACAAT CATAAGCGAT
TATGATACAA CAGCAGGCAA TCGCAGACGC ATGCTTGCCG GAAATAATGG ACATCAGCCC
AACGACCCTG AGAAAGCGGC AGCTGCCATC TTCCAGCTTA TTCATATGGA AAATCCTCCA
CTCCGGCTTT TGCTTGGTCA GGACGCATAT GACCGTGCCT TCGAAAAAAT CCGATTGCTT
CAGCAAGACT TCCAACGGAT GAAAAACATA ACGCTATCGA CAGGCTTTTG A
 
Protein sequence
MKNQKVWLIT GSSQGLGLAT IRYLLNKGQI VFATTRDSTR FSRDLFEHPH FHAIALDLTK 
EEEVKMAIGD VYKKYQRIDV LVNNAGYGFV GAVEEASVQE IHQVVDINVH ATIRMIRHVL
PYMRGQRNGH IINISSMAGL ISSAGWGIYN LTKYAVEGFS EALYHELIPL GIHVTILEPG
AFRTRFLAGS LTTAATIISD YDTTAGNRRR MLAGNNGHQP NDPEKAAAAI FQLIHMENPP
LRLLLGQDAY DRAFEKIRLL QQDFQRMKNI TLSTGF