| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0250 |
|---|
| Symbol | |
|---|
| ID | 8356355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 300918 |
|---|
| End bp | 302660 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 644962397 |
|---|
| Product | zinc finger SWIM domain protein |
|---|
| Protein accession | YP_003119951 |
|---|
| Protein GI | 256419298 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCACTT TAAAAAATTT TGAATTACAG ATAAGTGATA AGATAGTATT TCGGGGAAGA
GAATATTATG AGAATGAGGC TGTTGTGGAT CTGGAAGAAA CTGAAGAAGG TTTATGGTAC
GCGGAAGTGA TGGGAAACGA TACATATGAG GTAGAGGTGA AACTTTCGGG AAAGAACAAA
ATAGAATCAT ATTCATGCGA TTGTCCCTAT GACGGCGATA TGTGCAAACA TGTGGTAGCG
GTTTTATTTA CTCTCAAGGA GGAATTACTG AACACTATTG TGAAAAAAAA GACTGATACC
GAAACTGATT TTAAGAAGTT ATTGCAGAAA ATAAGCTTGG AAGAATATCA GGAATTTATT
CTGACTCATG CTGCAAGTGA TAAAAAATTC AAATCACTAT TTCAACGGTA CTTCGCAGAT
AAAGATAGTC AAATGGATAT AGCTAAAAGC TGTACCAAAC ATCTGAAAGG CTTGATAAGG
AGCTATTCGA ATGGAGATTT CATTGACTAT AGATCTATTC ATGGACTGGC AGATGAGATT
AATAGATTAC TTGATGAAAG CCAGCTTCTG ATAGAAAAGG GTAATTTTCT CAATGCGTTT
ATTTTAGCAC GATCGGTGTT GATAGAAGTT ATTGAAATAA TTACTTATTG TGATGATTCC
AGTGGCTACA TTGGAGCTAT TATCAATAGT TCTATAGAAT TGATAAAGAC TATAGCGGAA
GAAGCAAACG TTACAATGGA CGTACAGAAA GAAATTTTCG ACTTTGTGCA ATCAGCGATA
AGCCTTCCCA TTTATCTTGA ATATGGTGAT TTTGGATATG AGATGGTAGA TATCTATTCT
ATCCTTGCCA TAAAGTTAAA TAAGCAGACC TCCTATTTGA ATTTTATTGA TGGCCAGATT
AAAAAGGCAT CAACAGCCGA ATATTCTTAT AGGAAAGATT ATTTTCTTGT GCGGAAAATA
GCATTTTTAA AAGCTACAGG CAATATTAGT GATGCTCAGG CACTTCTTCA AAAAAATTTG
GATATTGTTG ATGTTAGACG CGGCGAGGTA AGTCGTTTGG TAGAAGAAGG AGATTTTTTT
TCGGCGAAGA AATTAATAAT TGAAGGAATT GAAATTGCCC GAAAAAAAGA CCATCCAGGG
ACAGTGACGG GGTGGGAGAA AGAGCTGCTA CAGATTGCTT TTTTAGAAAA CGATATAGAA
ACAATTAGGT ATTACACAAA GCATTTTGCT TTTGATCGGG GCTTTCATCT GATTTATTAC
AATCAATGGA AGGGTAGCTT TAATATTGCT GAGTGGGAGC AAGAAATAGA AAAATATATT
GAGGAAATTA TAGCAAGAGT TGAACTCAAA TATCAAAAAG ACAAGGGGAA GGTATGGTAC
TCACCAAGTA CATTATTGCT TGGTTTACTC GCCCCTATCT ATATCGAAGA AAAATATTGG
GATCGGTTAC TTAGCCTTAT AAGCAATGAA ACAGATTTGG ATCAATTACT ACATTATCAT
GATCATTTAT TGAATATTTA CCCCATACAG CTATTAGCAT TATATCTTCC CGCCTTTGAA
CGTAAAGGTG ATATAGTAGG AAACCGTCGG GAGTATGCGG ATTTGGCTAT TAAAATGATA
ATGGTAATAG AAACTATTCC TGCGGGAAAA GACGAAATCA TTTCCATTGC GGAGGAGATA
TGCCGTAAAT ATCCCCGGAG GCCTGCAATG ATAGAAGAAC TGCGTAGGGT AATCAAGCTA
TAG
|
|---|
| Protein sequence | MLTLKNFELQ ISDKIVFRGR EYYENEAVVD LEETEEGLWY AEVMGNDTYE VEVKLSGKNK
IESYSCDCPY DGDMCKHVVA VLFTLKEELL NTIVKKKTDT ETDFKKLLQK ISLEEYQEFI
LTHAASDKKF KSLFQRYFAD KDSQMDIAKS CTKHLKGLIR SYSNGDFIDY RSIHGLADEI
NRLLDESQLL IEKGNFLNAF ILARSVLIEV IEIITYCDDS SGYIGAIINS SIELIKTIAE
EANVTMDVQK EIFDFVQSAI SLPIYLEYGD FGYEMVDIYS ILAIKLNKQT SYLNFIDGQI
KKASTAEYSY RKDYFLVRKI AFLKATGNIS DAQALLQKNL DIVDVRRGEV SRLVEEGDFF
SAKKLIIEGI EIARKKDHPG TVTGWEKELL QIAFLENDIE TIRYYTKHFA FDRGFHLIYY
NQWKGSFNIA EWEQEIEKYI EEIIARVELK YQKDKGKVWY SPSTLLLGLL APIYIEEKYW
DRLLSLISNE TDLDQLLHYH DHLLNIYPIQ LLALYLPAFE RKGDIVGNRR EYADLAIKMI
MVIETIPAGK DEIISIAEEI CRKYPRRPAM IEELRRVIKL
|
|---|
| |