| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0231 |
|---|
| Symbol | |
|---|
| ID | 8356335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 276859 |
|---|
| End bp | 277593 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644962377 |
|---|
| Product | ABC transporter, permease protein |
|---|
| Protein accession | YP_003119932 |
|---|
| Protein GI | 256419279 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03518] gliding motility-associated ABC transporter permease protein GldF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGCAA TTTTTAAAAA AGAAATACAT CAGTTTTTCA GCAGCATAAC CGGATATGTC
GCCATCATCC TATTTCTGCT GGCCAACGGC CTGCTGTTAT TCGTTTTTCC CGATACCAGT
CTGCTTGATT ATGGATACGC TAATCTCGAC CCGCTTTTTG AGCTGGCGCC CATGATCTAC
CTGTTACTCA TTCCCGCTAT TACCATGCGT AGTTTCGCGG ATGAATTCAA ATCCGGCACC
ATGGAGCTGT TAAGCACGAA ACCATTGAGC TGGTGGCAGA TCGTCGGAGG AAAATTTACA
GCTGGTCTTG TAGTCGTACT GATCTCACTG ATCCCTACTG TTGTTTATTA TATCGCAGTC
AGACAACTGA GTGCCGATCC CGCTAATCTT GACAACGGTG GCATGGCAGG TTCCTATATC
GGCCTGTTTT TATTGGGCGC TGTATTCACC GCTGTAGGTG TATGGTCATC TTCCCTGACC
AGCAATTCAG TAGTTGCCTT CCTCATTGCT ATTTTTACCT GTTTCATATT CTACAATGGT
TTTGACGCGC TGAGCAAAGT ACCGGCCTTT TCCGGCAGCG CTGATTACTA CCTGCGTATG
GCTGGTATCA AATTTCACTA CACGTCTATC AGCCGTGGGG TGATCGATAG CCGGGATATT
ATTTATTTCC TGAGCATTAT CGGCCTGATG CTGTATCTGA CAAGATTATC ACTGCAACGC
AGGATATGGG ACTGA
|
|---|
| Protein sequence | MLAIFKKEIH QFFSSITGYV AIILFLLANG LLLFVFPDTS LLDYGYANLD PLFELAPMIY
LLLIPAITMR SFADEFKSGT MELLSTKPLS WWQIVGGKFT AGLVVVLISL IPTVVYYIAV
RQLSADPANL DNGGMAGSYI GLFLLGAVFT AVGVWSSSLT SNSVVAFLIA IFTCFIFYNG
FDALSKVPAF SGSADYYLRM AGIKFHYTSI SRGVIDSRDI IYFLSIIGLM LYLTRLSLQR
RIWD
|
|---|
| |