Gene Cpin_0229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0229 
Symbol 
ID8356333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp275024 
End bp276241 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content50% 
IMG OID644962375 
ProductCysteine desulfurase 
Protein accessionYP_003119930 
Protein GI256419277 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 
TIGRFAM ID[TIGR03402] cysteine desulfurase NifS 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAAAAC TGCCCGTTTA CCTGGATTAT AATGCTACTA CCCCCTGCGA TCCGCGCGTA 
GTAGAGGCCA TGCTTCCCTA TTTTTCGGAG ACATTTGGTA ATGCATCCAG CCGTAACCAT
TCTTTTGGCT GGGCAGCAGA GGCAGCAGTC GATCTGGCCC GTGAGCAGGT AGCTGCGCTA
ATAGGTGCAG ATCCTAAGGA GATTATCTTC ACCTCCGGGG CTACGGAAGC CGATAACCTT
GCGATGAAAG GCGTGTTTGA AATGTATGCC GACAAGGGCA ACCATATCAT TACGACTGAA
ATTGAACACA AAGCAGTGCT GGACACCTGC AAACACCTGG AAAAACTAGG GGCAGAGATA
ACTTATCTCA AGGTGAACAG TGAGGGCTTT CCGGATCTGA AAGAACTGGA AGCAGCCATC
ACGCCAAGAA CCATCCTGGT GTCCATCATG TATGCCAATA ACGAAATAGG GGTTATTAAT
CCTATAAAAG AGATCAGCGC CATTGCCAAG AGGCATGGAG TGCTGATGAT GAGCGACATA
TCCCAGGCGG CAGGAAAAGT GCCTGTGGAT GTCAACCGCG ATGGTATCGA CCTGGCGGCC
TTCAGCGCTC ATAAGCTCTA CGGTACCAAA GGAGCAGGCG CCCTTTATGT ACGTCGTAAA
TCTCCGCGTG TAAAAGTAAC TGCGCAGATG GATGGCGGCG GACATGAACG CGGGATGCGC
TCCGGTACGC TCAACGTACC AGGTATTGTA GCTTTCGGAA AAGCCTGTGA ATTATGCCAA
CAGGAAATGG AAGCAGAAGG ACAAAGACTG GCAGCCCTGC GTGACAAACT GGAAAACGCA
TTGCTGCAAC TGGAAGAAAC CGTTGTCAAC GGATCAAGAA CCAACCGTTT ACCGCATGCC
ACCAACATTT CCTTCCGTTA TGTGGAAGGA GAAGCCCTGA TGATGGGTTT TAACAAGAAT
CTTGCGCTAT CATCCGGTTC TGCCTGTACC TCCGCCTCTC CGGAACCCAG TTACGTATTG
AAGGGACTTG GCCTCAGCGA TGATATGGCC CATTCTTCCA TTCGTTTTGC ACTGGGACGC
TTCACAACTG AAGAAGAGAT CGATTATGCT ATTCAAACCG TTACAGATAC GGTCAATAAA
CTTAGAGAAA TAAGTCCGCT GTGGGAAATG TTTAAAGAAG GTGCGGACAT GAGCTCAATA
GAGTGGTCCC GTCTTTGA
 
Protein sequence
MLKLPVYLDY NATTPCDPRV VEAMLPYFSE TFGNASSRNH SFGWAAEAAV DLAREQVAAL 
IGADPKEIIF TSGATEADNL AMKGVFEMYA DKGNHIITTE IEHKAVLDTC KHLEKLGAEI
TYLKVNSEGF PDLKELEAAI TPRTILVSIM YANNEIGVIN PIKEISAIAK RHGVLMMSDI
SQAAGKVPVD VNRDGIDLAA FSAHKLYGTK GAGALYVRRK SPRVKVTAQM DGGGHERGMR
SGTLNVPGIV AFGKACELCQ QEMEAEGQRL AALRDKLENA LLQLEETVVN GSRTNRLPHA
TNISFRYVEG EALMMGFNKN LALSSGSACT SASPEPSYVL KGLGLSDDMA HSSIRFALGR
FTTEEEIDYA IQTVTDTVNK LREISPLWEM FKEGADMSSI EWSRL