| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0163 |
|---|
| Symbol | |
|---|
| ID | 8356263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 197176 |
|---|
| End bp | 202770 |
|---|
| Gene Length | 5595 bp |
|---|
| Protein Length | 1864 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644962306 |
|---|
| Product | alpha-2-macroglobulin domain protein |
|---|
| Protein accession | YP_003119865 |
|---|
| Protein GI | 256419212 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2373] Large extracellular alpha-helical protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTCCCA AAAAACGTCT GGCGGTCGTC TCCGCCTTTG CTGTGTGCCT GTTAATCTCT
TGCATCACAG CCTGTAGAAA TACAAAAAAA GTCATGAACC CTGCACTGGC GAAATACATC
GAAGCCTATA CCGCCGGTGT TATTTCCAGG CAGAGCACTA TCCGGGTACA ATTAACCAGT
AATGCGAATG TAACCCACAC ACAGAACGAA CCTGTGGACG AAGATCTGTT CAAATTCAGT
CCTGGTATCA AAGGAAAAGC CTACTGGGTA GATGCGACCA CGATCGAATT CCGACCGGAT
GCCAACCTGG AATCCGGCAA AACCTATAAT GCCACCTTTA AACTGGGTAA GGTCATGAAG
GTGGAAAGTG ACCTGAAAGA ATTTGACTTC GAATTCAAAG TCATCAAACC TTCCTACGCT
ATCGAGGATT ACGGCCTGAA AGCTACTAAC AGCAGTACGC TGAATAAAAT GACTTTCTCC
GGCGCCATCA CAACCGCCGA TACCGAAGAT CCACAACAGA TAGAAAAGAT CGTCAACGCT
TCCTATCAGG GTAAAAAAGT AGCGATCACC TGGCAGCACA ATGCGGCTGA CAAGATCTCT
ACCTTCACCA TAGACAACCT GGCCCGTGCT GACAAAGGAC AAGGCTCCCG TCAGCTGGAA
GTCACCTGGG ATGGTAAACC GCTGAAAGTA GATAATGTAT CTGGTAAAAA GACGGTAGAA
GTACCTGCTA TCTCCGACTT TAAAGTACTG GAGGTACGTG CGGTAGCCGA GGAAGAACAA
TACATCCTGG TACAGTTCTC CGACCCTGTC AGCGTAGCAC AGTCCCTGGA TGGTCTGATC
GGCGTAAGTG GTGTAAGCGA TCTCCGCTTC TCCATTGATG GTAGTGAGGT AAAAGTATTT
GGTCCGACCA GATTTGAAGG CAACTTTAAT GTCATCGTCA ATGAAGGCAT ACTAAACGTA
GCGGATGCGA AACTTGAGCA AAGCTTTTCT GCGAATGTAG TCTTCGAAAA TACGCAGCCT
TCCGTTACCA TTCCGGGCAA AGGAGTCATC CTGCCGGAAA GCAATAAACT GGTGATGCCA
TTCGAAGCAG TGAACCTCAG TGCTGTAGAT GTGACCATCA TCAAGATCTA TGAAAACAAT
ATCCCGCAAT ATCTCCAGCA GAACTCACTG GATGGCAGTC AGGAACTGCG CCGCGTAGGT
CGTCCCGTAG TGGAAAAGAC CATTCGCCTG GATGCTGATA AATCCCTGAA CCTGCATAAG
CGCAACCGCT TCTTCCTCGA TATGGAGAAA CTGCTGCGTA CTGAACCGGG AGCCATCTAT
CGTGTAACGA TCGGTTTCCG TAAATCATAC TCCCTGCTGG GTTGCTCCTC AACTGATAGT
GGCAGCGACA GCGAGAGTAA CAGCGAAGAA AGCGAAGAAG AGTATTATGG CGGTTACTAC
GGCAATGACA AAGTCGATGA AGACGATGAT TTCTGGCGCC GTTATGATAG CTATTATCCT
TACGGTTATT CCTGGGAACA GCGTGATAAC CCATGCTCCA ATTCCTATTA CAATAAAGAC
AGATGGGCTT CCCGTAACGT CTTCTCCTCC AATATCGGTC TGACCGCTAA ACGAGGAAAT
GACAACAGTA TGCTCATTGC TGTAACAGAT ATCCGCGACA CGAAGCCAAT GATCGGTGTC
GAACTGGAAC TCCTTGATTA CCAGAACCAG GTGATCTTCA AAACGAAAAG TGATGGAGAT
GGTCTGGCTA CTTTCGATCT GAAACGTAAA CCATACCTGC TGATCGCCAA AAAAGACGCA
GAAAGAGGTT ACCTGAAACT CGATGATGGT AACTCCCTGC CACTGGGTCG TTTTGATGTA
AAAGGTGAAG ACGTACAAAG CGGTATCAAA GGATTCCTCT ATGGTGAACG TGGCGTATGG
CGTCCCGGAG ATACCCTGTT CCTGTCCTTC ATACTGGAAG ACAAACAAAA GAAACTGCCG
GAAAATCACC CGGTAACACT GGAACTCTAC AATCCGAAAG GACAACTGTA CAGACAACTC
AATGCCTTAC AGTCTGTAAA CGGATTCTAC AGCTTTACAA CAGCCACCGG CGCGAATGAT
CCTACCGGTA ACTGGACCGC TAAAGTAAAA GTAGGTGGAG CCGTATTTAC CAAAAACCTG
CGTATCGAAA CCGTAAAGCC TAACAGGCTG AAAATAGACC TGAACTTTGG TAAGAACACA
ACACTTTCCA AAGCAGATGC GACAGAAGGT TCCCTGAATG CCCGCTGGAT GTTTGGCGCT
ACCGCACAAA ACCTGAAAGC GAAAGTAGAC GTCTCTTTAA CACAGCAGAC AACCAGCTTT
AAAAACTTCC AGAACTACCA TTTTGATGAT CCGATCACAC ACTTCGAATC AGAAAGCAAG
ACAATCTTCG AAAGCAGTCT GAATGAAAAT GGTACCGCTC CGGTAAAAGT AAATCTGCCA
CTGGGCAAAT TGGCGCCTGG TCAGCTGAAA GCCAGCTTTG AGATCAAGGT GTTTGAACCT
GGTGGTGATT TCAGTATCGA TCATTTCTCC ATGCCATACA ATCCGTTCGC CAGCTATGCA
GGTATCAGAA TGCCTGAAGG CGACCGTATG ACAGGTATGC TGCTCACTGA TAAAGATCAC
CCGATCAGCA TTGTCAATGT AGACGAAAAT GGCAACCTGC TCAGCGGTAA CCAGGATGTA
CAGGTTGAAC TGTATAAAGT ACGCTGGCGC TGGTGGTGGG ATGAAAACAG TGAAGATGAA
TTCAGCAACT TCACTCAGGA TAGCTACAAC CAGCTGTTGA AAAAAGAAAC CATGACATTA
CATGGTGGTA AAGGCACCTG GAACCTGCAG ATCAAATACC CTGACTGGGG TCGCTATCTC
GTACGTGTAA AAGACCTGAA GAGTGGTCAT ACCACCGGAC AGGCCGTATA TATCGACTGG
CCGGGATGGG CCGAAAGGGT ACAGAAAGAA AACCCTTCTG AAGCAGCTAT GCTGGTATTC
ACATCAGATA AAAGCCAGTA TAACGTAGGT GATGATATCA CCCTTACCAT CCCAAGCAGC
GAAGGCGGCC GCGGACTGGT AAGCATAGAA AGCGGCAGCA AAGTGCTGAA GACTTTCTGG
ATCAGCACCG AGAAAGGACA GACCGTTTAC AAGTTCAAGG CGGAAAAAGA AATGTCGCCT
AACATCTACG TCAACGTAAG CCTGTTGCAG AAACATGCAC AGACAGTCAA CGACCTGCCG
ATCCGTATGT ACGGTGTTAT TCCGATCACG ATCAATGACG CCAATACCGT CCTGAAACCG
GTGATCACGA TGCCTGATAA ACTGGAACCA GAACAGAATG CCAGCATCAC CGTATCTGAA
GCAAACGGTA AATCCATGAC TTATACCATC GCACTGGTGG ATGAAGGTTT GCTGGATCTG
ACCCGTTTCA AAACACCCGA TCCGCATAGT GCCTTCTATG CACGTGAAGC ACTGGGCGTT
AAAACATGGG ATCTCTTCGA TTATGTAATT GGTGCATGGG GCGGCGATAT GGAACGCATC
CTCAGCATTG GTGGTGACGA GGGACTGAAT AAAAATGCCG GCAGCGCGAA AGCAAACCGC
TTCAAGCCTG TGGTAATTTT CATGGGACCA TTCACTTCCA AAGGAGGTAA ACAGACACAT
AATTTCAAAC TCCCACCATA TGTAGGTTCT GTGAAAGCGA TGGTAGTAGC AGGACAGGAT
GGTGCTTACG GGGCTGCTGA AAAAGCAGTA GCGGTGAAGA AACCATTGAT GCTGCTGACT
ACATTACCAC GCGTACTGGG TCCTTCAGAA ACGATCCAGT TGCCGGTAAC TGTATTTGGT
ATGGAGAACA ATATCCGTTC GGCGAAAGTA ACACTGGCTA CCAGTCCGCT GCTGGAAGTA
GTAGGCGAGC GTACCAAAAC GGTAACATTC GCACAACCAG GCGAACAGAT CGTATACTTC
GACGTACGTG TTAAACCACA GGTCGGTGTG GCAAAAGTGA AAGTGACCGC TACCAGCGGC
GCTGCAAAAG CAGAAGACGA AACAGAACTG GAAGTGCGTA ATCCTAACCC GGTCATCACT
ACCGTTCAGG AATCCACATT ACAGGCGGGT CAAAGCTGGA GCACTGCCTA CAAACCTGCG
GGTATGGCTG GCACCAACAC CGGTGTACTG GAAGTATCCA CTATTCCTGC ACTGAATCTG
GCGAAACGCC TGAACTACCT GATACAATAT CCGCACGGTT GTGTAGAACA AACCACCTCC
GGCGTATTCC CGCAGCTGGC ACTAAATCAG CTGATGGACC TGAAACCGAA CGAACTGGCC
AATATCGAGA AAAACGTAAA AGCCGGTATC GGACGCCTGA AAGGCTTCCA GACTTCTGAC
GGAGGTCTGA GCTACTGGCC GGGTGAAGCG AAAGCTGACG AGTGGGGTAC CAACTATGCC
GGTCACTTCC TGCTGGAAGC ACAGGCAAAA GGATACGAAC TGCCAGCGGG TATGCTCGAC
CAATGGAAGA AATACCAGCG TAATAAGGCA GGTTCATGGG CGCCGTCTAC CACTAACTTC
TATGGTGGCG ACCTCACACA GGCATACCGC CTTTACCTGC TGGCACTGGC CAAAATACCA
GAACTGGGTG CTATGAACCG TCTGAGAGAG TTTAAGTACC TGTCTGTTGA AGCGAAATGG
AGACTGGCTG CTGCCTATAA ATTATCGGGT CAGCCGGAAC TGGCAAACAG CCTGGTACAA
AACCTTCCAA CAGAGGTAAA ACCATTCAAT CAGCTGGGTG GTACCTTCGG TTCCGACCTG
CGTGATAAAG CGATGATACT GGAAACACTG ACAATCCTCG GACAGCGTAA CCGCGCTAAC
GAACTGTTAC GTCAGATCGC TGCTAATCTC TCACAGGAAA CCTGGTACAG CACACAGACT
ACTGCATACG CACTCATTGC AGTGGCCAAA TATTGTGGTG TAAATACCAG CGGTAACAAA
ATGAACTTCA GTTACACCCT GAACGGCAGC AGCAATACTG TAAATGCCGC GTCTTACGTA
ACACAGGTAC CTGTTACTGT TAATAGTGAT GGTAATATCA GCATCCAGAA CAAAGGCCAG
AACGTACTGT ATACACGCCT GATCCTTCAG GGACGTCCGG AAGCCGGTCA GGAACCAAAC
GTTCCAAACA ATCCTGATGT ACTGGATATA CAGGTGAAAT ACAGCACCCG CGACGGTAAA
GTACTGGATC CTGCCACGCT GCGTCAGGGC GCTGACTTCA TGGCAACAGT GACCATCCAT
AACCCTGGCA AACGTGGTTA CTATGAGCAG ATGGCACTGA CTGAAATATT CCCGAGCGGA
TGGGAGATCA TCAATACCCG TCTGCTGGAA AATGACAGCA CCTTCAGTTC ATCACCATTT
ACTTACAAAG ACATCCGTGA TGACAGGGTA TACACTTACT TCAACCTGGA AGAAGGCAAA
ACCCGCACTT ATAATGTCCT GCTGAATGCA GCCTACCTCG GCCGTTACTA TCTGCCGGCG
GTATCCTGTG AAGCGATGTA TGATAATACC ATACACGCAT TCCTGCCAGG TAAATGGGTG
GAAGTGGTGA AGTAA
|
|---|
| Protein sequence | MGPKKRLAVV SAFAVCLLIS CITACRNTKK VMNPALAKYI EAYTAGVISR QSTIRVQLTS
NANVTHTQNE PVDEDLFKFS PGIKGKAYWV DATTIEFRPD ANLESGKTYN ATFKLGKVMK
VESDLKEFDF EFKVIKPSYA IEDYGLKATN SSTLNKMTFS GAITTADTED PQQIEKIVNA
SYQGKKVAIT WQHNAADKIS TFTIDNLARA DKGQGSRQLE VTWDGKPLKV DNVSGKKTVE
VPAISDFKVL EVRAVAEEEQ YILVQFSDPV SVAQSLDGLI GVSGVSDLRF SIDGSEVKVF
GPTRFEGNFN VIVNEGILNV ADAKLEQSFS ANVVFENTQP SVTIPGKGVI LPESNKLVMP
FEAVNLSAVD VTIIKIYENN IPQYLQQNSL DGSQELRRVG RPVVEKTIRL DADKSLNLHK
RNRFFLDMEK LLRTEPGAIY RVTIGFRKSY SLLGCSSTDS GSDSESNSEE SEEEYYGGYY
GNDKVDEDDD FWRRYDSYYP YGYSWEQRDN PCSNSYYNKD RWASRNVFSS NIGLTAKRGN
DNSMLIAVTD IRDTKPMIGV ELELLDYQNQ VIFKTKSDGD GLATFDLKRK PYLLIAKKDA
ERGYLKLDDG NSLPLGRFDV KGEDVQSGIK GFLYGERGVW RPGDTLFLSF ILEDKQKKLP
ENHPVTLELY NPKGQLYRQL NALQSVNGFY SFTTATGAND PTGNWTAKVK VGGAVFTKNL
RIETVKPNRL KIDLNFGKNT TLSKADATEG SLNARWMFGA TAQNLKAKVD VSLTQQTTSF
KNFQNYHFDD PITHFESESK TIFESSLNEN GTAPVKVNLP LGKLAPGQLK ASFEIKVFEP
GGDFSIDHFS MPYNPFASYA GIRMPEGDRM TGMLLTDKDH PISIVNVDEN GNLLSGNQDV
QVELYKVRWR WWWDENSEDE FSNFTQDSYN QLLKKETMTL HGGKGTWNLQ IKYPDWGRYL
VRVKDLKSGH TTGQAVYIDW PGWAERVQKE NPSEAAMLVF TSDKSQYNVG DDITLTIPSS
EGGRGLVSIE SGSKVLKTFW ISTEKGQTVY KFKAEKEMSP NIYVNVSLLQ KHAQTVNDLP
IRMYGVIPIT INDANTVLKP VITMPDKLEP EQNASITVSE ANGKSMTYTI ALVDEGLLDL
TRFKTPDPHS AFYAREALGV KTWDLFDYVI GAWGGDMERI LSIGGDEGLN KNAGSAKANR
FKPVVIFMGP FTSKGGKQTH NFKLPPYVGS VKAMVVAGQD GAYGAAEKAV AVKKPLMLLT
TLPRVLGPSE TIQLPVTVFG MENNIRSAKV TLATSPLLEV VGERTKTVTF AQPGEQIVYF
DVRVKPQVGV AKVKVTATSG AAKAEDETEL EVRNPNPVIT TVQESTLQAG QSWSTAYKPA
GMAGTNTGVL EVSTIPALNL AKRLNYLIQY PHGCVEQTTS GVFPQLALNQ LMDLKPNELA
NIEKNVKAGI GRLKGFQTSD GGLSYWPGEA KADEWGTNYA GHFLLEAQAK GYELPAGMLD
QWKKYQRNKA GSWAPSTTNF YGGDLTQAYR LYLLALAKIP ELGAMNRLRE FKYLSVEAKW
RLAAAYKLSG QPELANSLVQ NLPTEVKPFN QLGGTFGSDL RDKAMILETL TILGQRNRAN
ELLRQIAANL SQETWYSTQT TAYALIAVAK YCGVNTSGNK MNFSYTLNGS SNTVNAASYV
TQVPVTVNSD GNISIQNKGQ NVLYTRLILQ GRPEAGQEPN VPNNPDVLDI QVKYSTRDGK
VLDPATLRQG ADFMATVTIH NPGKRGYYEQ MALTEIFPSG WEIINTRLLE NDSTFSSSPF
TYKDIRDDRV YTYFNLEEGK TRTYNVLLNA AYLGRYYLPA VSCEAMYDNT IHAFLPGKWV
EVVK
|
|---|
| |