| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0139 |
|---|
| Symbol | |
|---|
| ID | 8356238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 171061 |
|---|
| End bp | 172206 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644962283 |
|---|
| Product | anti-FecI sigma factor, FecR |
|---|
| Protein accession | YP_003119843 |
|---|
| Protein GI | 256419190 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3712] Fe2+-dicitrate sensor, membrane component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACGA ATCTCGAAGA TATCAGAATA CTAGTGTTGC AGGAAATATC CGGAACCCTC
ACAGACGCCG GAAGGGAGAC GTTATTCAAT GAAATAACTG TTAACGAAGA CGCACGCGAA
ATGCGTGACG ATATGTTACA GGTACTCACA CCAGCAATTG TTGACAAAAT CAGGAGCCAA
CCATTTACTG ATCCTGCCGA CGCTATTATT AACCGTATAC ACCGCCAGAA AAGAAAGAAA
GTTATTGCCA TCAGCGCCAT CGCTGCCTCA GCAGCCGCTG CCGTGATCGC ACTCCTGACT
ATTCCACATC TGTTTAAACC GGAGTCATCG AACATCGGTA TCACTACCAG CCAGGCAGCA
CAGGTGAGTA ATAATAAAAA TATTCAGCTG CACCTCGCCG GTGGACAGGT AGTCAACCTC
AACACCGATA CCAGCCAGGT CATTGCCGGT AATGTTACCA TGCAATCCAG CAACAAAACC
CTGACGTACA CAACCAATCC GTCAGCCAAC GCCGCTGAAT TCGCCACACT TACCGTTCCC
CCGGGAAAAG ATTATACCAT ACGCTTATCC GATGGGACAG AAGTACAACT GAACGCCGCC
ACCTCCATCA GGTTCCCGCT CGCCTTCAGC AGTAAAAACA GAGAAGTGTA CATCAACGGG
GAAGCTTACC TGAAAATAGC TAAACAGGCC AGCCAGCCAT TCACCGTACA CCTCCCCAAT
ACCACCGTCA GAGTATTAGG TACCGAATTC AACGTCAATA CCTACGATAG CGGTGTCGCT
AAAGTAGCCC TCGTACAGGG CGCCGTAAAA ATCGTTGGCG CACAGGACAG CCTGCAGCTA
TCGCCCGGCC AGGAAGCAGT GTACACCTCC AGCAAACTAA GTACCTCCGT CTTTGATGAA
ACTGACGTCC TGAGTTGGAG AGTAGGTAAA TTCCTCTTCA GCAACGCAAG ACTGGAAGAA
GTATGCCGGG TCATTCCCCG CTTATATGGT ATATCTCTTG AACTTGATAA TAAAGAAGTA
GCCAATAAAC GCTTTTCAGG AGTAATCGAC AGACACCAAC CCGTGGAAAA TGTGCTGAAA
GCACTAAAAG CCACCAACGG TATCGACTAT TACATCGATA AAGACGGCGC CTTCCACATT
AAATAA
|
|---|
| Protein sequence | MNTNLEDIRI LVLQEISGTL TDAGRETLFN EITVNEDARE MRDDMLQVLT PAIVDKIRSQ
PFTDPADAII NRIHRQKRKK VIAISAIAAS AAAAVIALLT IPHLFKPESS NIGITTSQAA
QVSNNKNIQL HLAGGQVVNL NTDTSQVIAG NVTMQSSNKT LTYTTNPSAN AAEFATLTVP
PGKDYTIRLS DGTEVQLNAA TSIRFPLAFS SKNREVYING EAYLKIAKQA SQPFTVHLPN
TTVRVLGTEF NVNTYDSGVA KVALVQGAVK IVGAQDSLQL SPGQEAVYTS SKLSTSVFDE
TDVLSWRVGK FLFSNARLEE VCRVIPRLYG ISLELDNKEV ANKRFSGVID RHQPVENVLK
ALKATNGIDY YIDKDGAFHI K
|
|---|
| |