Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0108 |
Symbol | |
ID | 8356207 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 131798 |
End bp | 134281 |
Gene Length | 2484 bp |
Protein Length | 827 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644962252 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_003119812 |
Protein GI | 256419159 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGTAT TTTTCCATTA TCTTTATTTC ACGAACACGC CAAGCCACGT TCCTGATACT ATGAGCAGCA CCGCAAATGA GCAGACATCC CTTCATCAGC ATGACGAACA GCATGAACGT TCCGGAGACG CAATCCGGTT GGAGGCACTA CTACAACAGC AGACGGATGT AATGGAAATG CTGTCGGCAG GCATCCCCTT GCAGGATATA CTTACACAGA TCATTACCTG GATACAACAA ACTGACCAGG AAATAATCGC CAGCATTTCA TTGGCTGGTC AGGCATCCAC ACATATGGGT ACAGCCTGCT GCACCACTCC GCTGACAGGA AAACAAGGAA ATGCCCTTGG AAGTTTTGAA ATCAGCTATA AATCCGGAAG ACAACCGACT CCCGCAGAAC TGCATTTCAT TCGCCTGGTC GCCCGCACCA TTGTGATGGC GATCGAACAT TCGCAGCAAA GCGTACCAAC TGTAACACAA ACCGCCAATG CGCGGCCTGC CACACCCGAA TCTGCTGCTG AAAGGGAAAA CTTCTATCAG CTGCTCATGG ACACACCGGC AGTTATTGCC GTACTCAGCG GTCCGCAACA TGTATACATG CTGGCGAATA AGCTGTATAT GGAAACGATC GGGATCGATC GTAATATCGT AGGTAAACCG ATCCGGGAAG CCCTCCCCGA ACTGGCAGAT CAGGGGATCT TTGAACTACT GGACGACGTA TACCGCACAG GACAACCATT CATCGGTCAC GAAATAGAAG TAGGTCTCGA CCGTAAAGGC ACCGGTGAAA GGGAACCCGT ATTTTTCAAC TTTATTTACC AGCCTATCCG CGACGCGGAA GGAAAGGTGA TACAGATACT CGTACACGCC ATCGATGTTA CGCCTTCTGT CATGCAGCGC AGAAAGGCAG AACAAAGCGA ACAACAATTC AAAAGTTTCG TCGCCCATTC CCCGACACCT ATTGGTATAT ACGTAGGGAA AGAACTACGG ATCCAGACTG TCAACGATGC CATCCTGCAA GCCTGGGAAA AAGACGCTTC CGTGGTCGGT AAAACCTTCC GTGAAGCAAT CCCCGAATTG GAAGGACAGC CATTCTTCGA CATCCTGGAC AGGGTTTATG ACACCGGCGA AACATACGAA GCCGTAGAGG AAAAGGTCAT GCTGATGCGG GACGGCATAC TATCGCCTAC CTATTACAAC TTCACCTATA AGGCGCTCCG GGATGAACAG GGAGAAATCT ATGCGGTTAT GAATACCGCT ATGGAAGTAA CCGAACAGGT CAAAGCACGG CAAAAACTGG CGGAAGCAGA AGAGAACCTG CGGAATGCTA TTGAAGTAGC AAAACTGGGT GACTGGAAAA TAAATCTGCA GACCGGGGAA GTCGTCCTCG CTGATCGCAT ACAGCAATGG TTTGGCGCCT CACCTGGTGA AACCATCACT ATTGAAGAAG CCACTGCCTG CATCACCGAC CCTTCTATTC TGACCAACGC CCTTGAACGT GCGTTACAAC CTGGCGCTGA CAGGATGATC AATGTCGACT ATGAAGTCAC GAACTTCAGA ACAGGTGAAA AACGGGTCAT GCATACCTCC GGAAAAGTCT TCCTGGACGA TATCAGCCAA CCCTATATGA TCATTGGGAT CACCCAGGAC GTCACCGAAC AGCGGCAACG GCAACAGGAA CTGGAAAGAC TGGTCAATGA AAGAACCCGT GCACTCAGCA TCGCCAATAT CGAACTGAAA GAAGCGAATA AGACCCTGGA AAGAGTCAAT AACAACCTGG AACAATATGC CTACGTGACC AGTCATGACC TCCAGGAACC ACTGAGAAAA ATCAAAATAT TCTCCGACAT CCTGCAGAAT AGAACGGATC ATACAGCAGA TATCTTCACC CGCAAATACC TGAATAAAAT TGACGCGTCC GTCAACAGAA TGATGGCACT CATCAATGAC CTGCTGAATT TCTCCCGACT GGATAAAGCC GAAAATACCT TTGTCCCCAC TGATCTCAAC CTTATCATAG AAGATGTAAA AGAAGATTTT GAACTTGCTA TTAAAGAAAA AAAGGTAATT TTGAATGTCT CGCCCCTGCA GCAGATAGCT GCCGTACCTC TACAAATACG GCAACTCTTT TTTAACCTTG TTGGTAACGC TATCAAATTT TCCCGGCAGG ACCTTACTCC AATCGTCAAT ATCAGCGGCC GCTCCGTACC CGCAACAGAA ATTTCCACGC ATCCACAGTT GAATCCATCA TGGAAGTGGT ATGAAATCAT CGTGAGCGAC AATGGTATCG GCTTCGAACA ACGTTATGCA GAGAAGATCT TTACCATCTT TCAACGACTA CATACCCGCG ACGTCTACTC CGGTACCGGC ATAGGTCTCG CTCTTTGCGA AAAAGTGGTC AGCAACCACC ACGGAAAGAT CTATGCCAAA GGAATAGTCA ATGAAGGCGC CAGCTTCCAC ATCCTTATTC CTATCACGCG ATAG
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Protein sequence | MPVFFHYLYF TNTPSHVPDT MSSTANEQTS LHQHDEQHER SGDAIRLEAL LQQQTDVMEM LSAGIPLQDI LTQIITWIQQ TDQEIIASIS LAGQASTHMG TACCTTPLTG KQGNALGSFE ISYKSGRQPT PAELHFIRLV ARTIVMAIEH SQQSVPTVTQ TANARPATPE SAAERENFYQ LLMDTPAVIA VLSGPQHVYM LANKLYMETI GIDRNIVGKP IREALPELAD QGIFELLDDV YRTGQPFIGH EIEVGLDRKG TGEREPVFFN FIYQPIRDAE GKVIQILVHA IDVTPSVMQR RKAEQSEQQF KSFVAHSPTP IGIYVGKELR IQTVNDAILQ AWEKDASVVG KTFREAIPEL EGQPFFDILD RVYDTGETYE AVEEKVMLMR DGILSPTYYN FTYKALRDEQ GEIYAVMNTA MEVTEQVKAR QKLAEAEENL RNAIEVAKLG DWKINLQTGE VVLADRIQQW FGASPGETIT IEEATACITD PSILTNALER ALQPGADRMI NVDYEVTNFR TGEKRVMHTS GKVFLDDISQ PYMIIGITQD VTEQRQRQQE LERLVNERTR ALSIANIELK EANKTLERVN NNLEQYAYVT SHDLQEPLRK IKIFSDILQN RTDHTADIFT RKYLNKIDAS VNRMMALIND LLNFSRLDKA ENTFVPTDLN LIIEDVKEDF ELAIKEKKVI LNVSPLQQIA AVPLQIRQLF FNLVGNAIKF SRQDLTPIVN ISGRSVPATE ISTHPQLNPS WKWYEIIVSD NGIGFEQRYA EKIFTIFQRL HTRDVYSGTG IGLALCEKVV SNHHGKIYAK GIVNEGASFH ILIPITR
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