Gene Cpin_0108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0108 
Symbol 
ID8356207 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp131798 
End bp134281 
Gene Length2484 bp 
Protein Length827 aa 
Translation table11 
GC content48% 
IMG OID644962252 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003119812 
Protein GI256419159 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAGTAT TTTTCCATTA TCTTTATTTC ACGAACACGC CAAGCCACGT TCCTGATACT 
ATGAGCAGCA CCGCAAATGA GCAGACATCC CTTCATCAGC ATGACGAACA GCATGAACGT
TCCGGAGACG CAATCCGGTT GGAGGCACTA CTACAACAGC AGACGGATGT AATGGAAATG
CTGTCGGCAG GCATCCCCTT GCAGGATATA CTTACACAGA TCATTACCTG GATACAACAA
ACTGACCAGG AAATAATCGC CAGCATTTCA TTGGCTGGTC AGGCATCCAC ACATATGGGT
ACAGCCTGCT GCACCACTCC GCTGACAGGA AAACAAGGAA ATGCCCTTGG AAGTTTTGAA
ATCAGCTATA AATCCGGAAG ACAACCGACT CCCGCAGAAC TGCATTTCAT TCGCCTGGTC
GCCCGCACCA TTGTGATGGC GATCGAACAT TCGCAGCAAA GCGTACCAAC TGTAACACAA
ACCGCCAATG CGCGGCCTGC CACACCCGAA TCTGCTGCTG AAAGGGAAAA CTTCTATCAG
CTGCTCATGG ACACACCGGC AGTTATTGCC GTACTCAGCG GTCCGCAACA TGTATACATG
CTGGCGAATA AGCTGTATAT GGAAACGATC GGGATCGATC GTAATATCGT AGGTAAACCG
ATCCGGGAAG CCCTCCCCGA ACTGGCAGAT CAGGGGATCT TTGAACTACT GGACGACGTA
TACCGCACAG GACAACCATT CATCGGTCAC GAAATAGAAG TAGGTCTCGA CCGTAAAGGC
ACCGGTGAAA GGGAACCCGT ATTTTTCAAC TTTATTTACC AGCCTATCCG CGACGCGGAA
GGAAAGGTGA TACAGATACT CGTACACGCC ATCGATGTTA CGCCTTCTGT CATGCAGCGC
AGAAAGGCAG AACAAAGCGA ACAACAATTC AAAAGTTTCG TCGCCCATTC CCCGACACCT
ATTGGTATAT ACGTAGGGAA AGAACTACGG ATCCAGACTG TCAACGATGC CATCCTGCAA
GCCTGGGAAA AAGACGCTTC CGTGGTCGGT AAAACCTTCC GTGAAGCAAT CCCCGAATTG
GAAGGACAGC CATTCTTCGA CATCCTGGAC AGGGTTTATG ACACCGGCGA AACATACGAA
GCCGTAGAGG AAAAGGTCAT GCTGATGCGG GACGGCATAC TATCGCCTAC CTATTACAAC
TTCACCTATA AGGCGCTCCG GGATGAACAG GGAGAAATCT ATGCGGTTAT GAATACCGCT
ATGGAAGTAA CCGAACAGGT CAAAGCACGG CAAAAACTGG CGGAAGCAGA AGAGAACCTG
CGGAATGCTA TTGAAGTAGC AAAACTGGGT GACTGGAAAA TAAATCTGCA GACCGGGGAA
GTCGTCCTCG CTGATCGCAT ACAGCAATGG TTTGGCGCCT CACCTGGTGA AACCATCACT
ATTGAAGAAG CCACTGCCTG CATCACCGAC CCTTCTATTC TGACCAACGC CCTTGAACGT
GCGTTACAAC CTGGCGCTGA CAGGATGATC AATGTCGACT ATGAAGTCAC GAACTTCAGA
ACAGGTGAAA AACGGGTCAT GCATACCTCC GGAAAAGTCT TCCTGGACGA TATCAGCCAA
CCCTATATGA TCATTGGGAT CACCCAGGAC GTCACCGAAC AGCGGCAACG GCAACAGGAA
CTGGAAAGAC TGGTCAATGA AAGAACCCGT GCACTCAGCA TCGCCAATAT CGAACTGAAA
GAAGCGAATA AGACCCTGGA AAGAGTCAAT AACAACCTGG AACAATATGC CTACGTGACC
AGTCATGACC TCCAGGAACC ACTGAGAAAA ATCAAAATAT TCTCCGACAT CCTGCAGAAT
AGAACGGATC ATACAGCAGA TATCTTCACC CGCAAATACC TGAATAAAAT TGACGCGTCC
GTCAACAGAA TGATGGCACT CATCAATGAC CTGCTGAATT TCTCCCGACT GGATAAAGCC
GAAAATACCT TTGTCCCCAC TGATCTCAAC CTTATCATAG AAGATGTAAA AGAAGATTTT
GAACTTGCTA TTAAAGAAAA AAAGGTAATT TTGAATGTCT CGCCCCTGCA GCAGATAGCT
GCCGTACCTC TACAAATACG GCAACTCTTT TTTAACCTTG TTGGTAACGC TATCAAATTT
TCCCGGCAGG ACCTTACTCC AATCGTCAAT ATCAGCGGCC GCTCCGTACC CGCAACAGAA
ATTTCCACGC ATCCACAGTT GAATCCATCA TGGAAGTGGT ATGAAATCAT CGTGAGCGAC
AATGGTATCG GCTTCGAACA ACGTTATGCA GAGAAGATCT TTACCATCTT TCAACGACTA
CATACCCGCG ACGTCTACTC CGGTACCGGC ATAGGTCTCG CTCTTTGCGA AAAAGTGGTC
AGCAACCACC ACGGAAAGAT CTATGCCAAA GGAATAGTCA ATGAAGGCGC CAGCTTCCAC
ATCCTTATTC CTATCACGCG ATAG
 
Protein sequence
MPVFFHYLYF TNTPSHVPDT MSSTANEQTS LHQHDEQHER SGDAIRLEAL LQQQTDVMEM 
LSAGIPLQDI LTQIITWIQQ TDQEIIASIS LAGQASTHMG TACCTTPLTG KQGNALGSFE
ISYKSGRQPT PAELHFIRLV ARTIVMAIEH SQQSVPTVTQ TANARPATPE SAAERENFYQ
LLMDTPAVIA VLSGPQHVYM LANKLYMETI GIDRNIVGKP IREALPELAD QGIFELLDDV
YRTGQPFIGH EIEVGLDRKG TGEREPVFFN FIYQPIRDAE GKVIQILVHA IDVTPSVMQR
RKAEQSEQQF KSFVAHSPTP IGIYVGKELR IQTVNDAILQ AWEKDASVVG KTFREAIPEL
EGQPFFDILD RVYDTGETYE AVEEKVMLMR DGILSPTYYN FTYKALRDEQ GEIYAVMNTA
MEVTEQVKAR QKLAEAEENL RNAIEVAKLG DWKINLQTGE VVLADRIQQW FGASPGETIT
IEEATACITD PSILTNALER ALQPGADRMI NVDYEVTNFR TGEKRVMHTS GKVFLDDISQ
PYMIIGITQD VTEQRQRQQE LERLVNERTR ALSIANIELK EANKTLERVN NNLEQYAYVT
SHDLQEPLRK IKIFSDILQN RTDHTADIFT RKYLNKIDAS VNRMMALIND LLNFSRLDKA
ENTFVPTDLN LIIEDVKEDF ELAIKEKKVI LNVSPLQQIA AVPLQIRQLF FNLVGNAIKF
SRQDLTPIVN ISGRSVPATE ISTHPQLNPS WKWYEIIVSD NGIGFEQRYA EKIFTIFQRL
HTRDVYSGTG IGLALCEKVV SNHHGKIYAK GIVNEGASFH ILIPITR