Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_0037 |
Symbol | |
ID | 8356134 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 43039 |
End bp | 44586 |
Gene Length | 1548 bp |
Protein Length | 515 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644962183 |
Product | Integrase catalytic region |
Protein accession | YP_003119745 |
Protein GI | 256419092 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4584] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACAAA CGCCCATTGC AATGGAACAA TTAAGACAGC TTTTACAACT TCACAATGAT GGAGTTGGAA TACGGGAGAT GGCACGCCGC ATAGGTATTA GCCGCAATAG CGTGCGTAAA TATCTGTGTC TACTCTCTGA TGATTCTACT CAGCAACAGC ATCCGGATAA TAAAGCTCTT GCTGAAAAGG CGTATACCAA TGACAATACC GTTCACGATA TGCATCGACT TGAACAACTG GTTGTCCATT TGAAATACGC GCAGGGAGAA TTAGGCAAAG TTGGAGTCAC CCGTCAACTG CTTTGGCGGG AATACTTACA GCAGCATCCT GATGGATACG CTTACAGCCA TTATTGTCAT CACCTTAACC AGTATCTTAA GAAACTGGAT GTGACAATGC ATATGGAATA TTCCATTGCT GATATGATCA TGATCGACTT TGCAGGTAAA AAGCTCCATT ATATTGATCT TGCTACCGGA GAACTGATCG AATGGGAAGT ATTTATCGCA ATTCTACCTT TTAGCGGGCT TATCTTCTGC GAGGCAGTAC ATAGTCAGCA AACAGCCGAC TTTGTTCATT GCATCAACGC TATGCTATTA TTCTATGGAG GAGCTCCTAA TACGATTCTC TGTGATAACC TAAGAACCGC TGTAAAGCAG CCAAATCGCT ATGAACCATT GTTTACTGAT ATCTGTACAC AACTCAGTGA GCATTATGCC ACTACCTTTA GTGCGACCAG ACCATACAGC CCACGTGATA AAGCGATGGT CGAGAAAGCT GTAAATATCA TATATAACAA CGTATATGGC CCACTTAGGA AACGGGAGTT TACCAATCTT AAGGCACTTA ATGCGGCTGT GCACGAGCAA CTGCTGCTAC TCAATAATAA ACCTTACAAA AGCACCCCAT ACAGTCGCTG GCATTATTTT GAACAGCAGG AACAATCCTC TCTGAAGCCA CTACCGCCAC AACCATTTAG TGCCAAAAAA GTGGTGCAAC TCACTGTTCA GCGTAACTAT CACGTTCAGC TCTCAGAAGA CCACAGATAC TATAGTGTTC CCTATGTCCA TGTCGGTAAA AAGGTTAAAG TACTTTATGA TCAACGGACG GTGGAAGTCT ATCTGGATCA CCAACGCATT GCACTACATC GAAGAGACGG TCACAATAAA GCATATACAA CGCTAGCCGA ACATATGCCG CCTCATCACC AGCGTATGCA ACTGATCAAA GGATGGAACC GCGAGGATCT GTTGCAACAG GCAGCTCGTA TTGGAACATC GACCCATCAG GCAGCAGGGC TAATGCTTGA AAACAGTATC TATATCGAGC AGAATTACAA AGCCTGTTTC GGAATGTTGA TGCTGCAGAA GAAATATGGT TCAGACAGGT TAGAGGCAGC CTGCAATAGA GCATTGACTG GCACTCGCGT AAACTATACG CTCATTAAAA ACATCCTTGA GAGAGGAATG GATAAATCGG CTCCTGCTTC AGAAGCATCA TCTATACCTC TACATGATAA TATAAGAGGT AAAGACCACT ATCAATAA
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Protein sequence | MTQTPIAMEQ LRQLLQLHND GVGIREMARR IGISRNSVRK YLCLLSDDST QQQHPDNKAL AEKAYTNDNT VHDMHRLEQL VVHLKYAQGE LGKVGVTRQL LWREYLQQHP DGYAYSHYCH HLNQYLKKLD VTMHMEYSIA DMIMIDFAGK KLHYIDLATG ELIEWEVFIA ILPFSGLIFC EAVHSQQTAD FVHCINAMLL FYGGAPNTIL CDNLRTAVKQ PNRYEPLFTD ICTQLSEHYA TTFSATRPYS PRDKAMVEKA VNIIYNNVYG PLRKREFTNL KALNAAVHEQ LLLLNNKPYK STPYSRWHYF EQQEQSSLKP LPPQPFSAKK VVQLTVQRNY HVQLSEDHRY YSVPYVHVGK KVKVLYDQRT VEVYLDHQRI ALHRRDGHNK AYTTLAEHMP PHHQRMQLIK GWNREDLLQQ AARIGTSTHQ AAGLMLENSI YIEQNYKACF GMLMLQKKYG SDRLEAACNR ALTGTRVNYT LIKNILERGM DKSAPASEAS SIPLHDNIRG KDHYQ
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