Gene Cpin_0037 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_0037 
Symbol 
ID8356134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp43039 
End bp44586 
Gene Length1548 bp 
Protein Length515 aa 
Translation table11 
GC content43% 
IMG OID644962183 
ProductIntegrase catalytic region 
Protein accessionYP_003119745 
Protein GI256419092 
COG category[L] Replication, recombination and repair 
COG ID[COG4584] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACAAA CGCCCATTGC AATGGAACAA TTAAGACAGC TTTTACAACT TCACAATGAT 
GGAGTTGGAA TACGGGAGAT GGCACGCCGC ATAGGTATTA GCCGCAATAG CGTGCGTAAA
TATCTGTGTC TACTCTCTGA TGATTCTACT CAGCAACAGC ATCCGGATAA TAAAGCTCTT
GCTGAAAAGG CGTATACCAA TGACAATACC GTTCACGATA TGCATCGACT TGAACAACTG
GTTGTCCATT TGAAATACGC GCAGGGAGAA TTAGGCAAAG TTGGAGTCAC CCGTCAACTG
CTTTGGCGGG AATACTTACA GCAGCATCCT GATGGATACG CTTACAGCCA TTATTGTCAT
CACCTTAACC AGTATCTTAA GAAACTGGAT GTGACAATGC ATATGGAATA TTCCATTGCT
GATATGATCA TGATCGACTT TGCAGGTAAA AAGCTCCATT ATATTGATCT TGCTACCGGA
GAACTGATCG AATGGGAAGT ATTTATCGCA ATTCTACCTT TTAGCGGGCT TATCTTCTGC
GAGGCAGTAC ATAGTCAGCA AACAGCCGAC TTTGTTCATT GCATCAACGC TATGCTATTA
TTCTATGGAG GAGCTCCTAA TACGATTCTC TGTGATAACC TAAGAACCGC TGTAAAGCAG
CCAAATCGCT ATGAACCATT GTTTACTGAT ATCTGTACAC AACTCAGTGA GCATTATGCC
ACTACCTTTA GTGCGACCAG ACCATACAGC CCACGTGATA AAGCGATGGT CGAGAAAGCT
GTAAATATCA TATATAACAA CGTATATGGC CCACTTAGGA AACGGGAGTT TACCAATCTT
AAGGCACTTA ATGCGGCTGT GCACGAGCAA CTGCTGCTAC TCAATAATAA ACCTTACAAA
AGCACCCCAT ACAGTCGCTG GCATTATTTT GAACAGCAGG AACAATCCTC TCTGAAGCCA
CTACCGCCAC AACCATTTAG TGCCAAAAAA GTGGTGCAAC TCACTGTTCA GCGTAACTAT
CACGTTCAGC TCTCAGAAGA CCACAGATAC TATAGTGTTC CCTATGTCCA TGTCGGTAAA
AAGGTTAAAG TACTTTATGA TCAACGGACG GTGGAAGTCT ATCTGGATCA CCAACGCATT
GCACTACATC GAAGAGACGG TCACAATAAA GCATATACAA CGCTAGCCGA ACATATGCCG
CCTCATCACC AGCGTATGCA ACTGATCAAA GGATGGAACC GCGAGGATCT GTTGCAACAG
GCAGCTCGTA TTGGAACATC GACCCATCAG GCAGCAGGGC TAATGCTTGA AAACAGTATC
TATATCGAGC AGAATTACAA AGCCTGTTTC GGAATGTTGA TGCTGCAGAA GAAATATGGT
TCAGACAGGT TAGAGGCAGC CTGCAATAGA GCATTGACTG GCACTCGCGT AAACTATACG
CTCATTAAAA ACATCCTTGA GAGAGGAATG GATAAATCGG CTCCTGCTTC AGAAGCATCA
TCTATACCTC TACATGATAA TATAAGAGGT AAAGACCACT ATCAATAA
 
Protein sequence
MTQTPIAMEQ LRQLLQLHND GVGIREMARR IGISRNSVRK YLCLLSDDST QQQHPDNKAL 
AEKAYTNDNT VHDMHRLEQL VVHLKYAQGE LGKVGVTRQL LWREYLQQHP DGYAYSHYCH
HLNQYLKKLD VTMHMEYSIA DMIMIDFAGK KLHYIDLATG ELIEWEVFIA ILPFSGLIFC
EAVHSQQTAD FVHCINAMLL FYGGAPNTIL CDNLRTAVKQ PNRYEPLFTD ICTQLSEHYA
TTFSATRPYS PRDKAMVEKA VNIIYNNVYG PLRKREFTNL KALNAAVHEQ LLLLNNKPYK
STPYSRWHYF EQQEQSSLKP LPPQPFSAKK VVQLTVQRNY HVQLSEDHRY YSVPYVHVGK
KVKVLYDQRT VEVYLDHQRI ALHRRDGHNK AYTTLAEHMP PHHQRMQLIK GWNREDLLQQ
AARIGTSTHQ AAGLMLENSI YIEQNYKACF GMLMLQKKYG SDRLEAACNR ALTGTRVNYT
LIKNILERGM DKSAPASEAS SIPLHDNIRG KDHYQ