| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0015 |
|---|
| Symbol | |
|---|
| ID | 8356112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 18056 |
|---|
| End bp | 19609 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644962163 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003119725 |
|---|
| Protein GI | 256419072 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.364148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCTG AGACGCCTAC TTATAAACTC ACCGTCTCCG CCGTTGGTGT AATGTCAGAT
TTTGCCCATC TCACCGTATA CAACGGCTTC CTGGAAGATA TCGCCAGAGG ATATGAACAA
CTGAACCTGG AGCTGAAACC TGGCTTATAC AGTATCACCC TTAAACTGGA TGGCAATATC
ATCAAGGAAC ATGTACGCCT GACGCAGGAT ATGGATTTCC AGATCCCGAC ACCACCGGTG
TATGCCTCGC TGGTAGCGGA TAAGTTTAAG TCCTCACATG AATATTATGC GACCAACGCG
CATAAATATA GCCTTGAGCC TACCGTCGGA AATGCAACGG AGGAAGGAGG CGCAATTTTC
CTCTTTTTCC GGTATACGGA TGTGGAAAAA AGAAGAGAAC TGAATAATGA ACAGCAGTCC
CTCGGACAAG GATTCTCGCT GCTTGACGCA GGCAGGAACG TCATATACAA ACTGGAAGGC
AACAACATCA AAGAAGATAC AGACGCCGGC TGGCTGGCCT TTCACGCAGT ATTGCAGGAA
GGAACTTATT ACCTGCATTA TACCGGACAT CAAGGTAAGC CAGGCATAGC TGATGACCAG
GATCTGCCTG CCCGTGAAAT ACCCATCCAG GTATTCAAAG CCAGCGATCA ACTGAAAGGA
TTATCAGGTG AACGCTGGCA GACACAAGTC TTTCTCACCT TTGGTTATGG TCCGATCTTC
CCTTCCATGA GCATTTTCAT CGCATCCCGC AAACAGGGAT TTGTGAATGA CGATGAAGGG
AACTATCGGA TAGACGGACT CCGGCATAAG TTTCACAACG GTGTGTACAT TCTCCCGGAG
AAAGTACTAC TCGAATTTGA ACAGGGTCAA TGGACGTCTC CGATGAAAGG ACTCTTAGCT
GCTTATGTTT ATTTTAGTAG TCCGGAGCTG GATAATGAGG AATTATTCAG GAATGTCACA
CAGGATATCC CCATCCTCCT GGGACAGGAC ACCCCGGATG TACAAGCCCT ACAGATCATG
GCCGCCCAGT ACTACCGGGA GCCGATTCCA CCCATTTCAT TAAGTGCGCC TTGTATGTTC
CTGGCAGGTA TCCGCGCGAT TATCAGGGCT TCTATTAAAG CGCCGGATGT GATTGTGGAT
GATAGTCTGT TAGAAGACAT TACCGACAAG TTATACAACG ACATGGTCTG GACTTCCTAT
CAGCCGGCAC CGATACCGGA GCCGATACTG GAATCCATGG CTGCTCCGCA AAGTGAAGTC
ACTTCCAGCA TTTTCAGTGT AGTAGAAAAG ATTATCGGCA ATGAAAAATC GCCGGAGGAA
ATCGGGGAGC GTTTATTAAA ATCGCAGACG GTGAGTACCC TGCTGTATTA CATTGACAAA
CTGGATCACG AACTGGATGT CAATGACCTG GCGACCAGAT TACAAATCCC TCCCAATGTA
GTACGCAAAA CAGTACAGCA TATCCTCAAT TTTTCCGAAA GCATTAAAGA TGCTGAGAGT
AAGCCGGAGC AATTTACACT CCGCAATATC AATAAACTGA AGAATATCCA GTAA
|
|---|
| Protein sequence | MTSETPTYKL TVSAVGVMSD FAHLTVYNGF LEDIARGYEQ LNLELKPGLY SITLKLDGNI
IKEHVRLTQD MDFQIPTPPV YASLVADKFK SSHEYYATNA HKYSLEPTVG NATEEGGAIF
LFFRYTDVEK RRELNNEQQS LGQGFSLLDA GRNVIYKLEG NNIKEDTDAG WLAFHAVLQE
GTYYLHYTGH QGKPGIADDQ DLPAREIPIQ VFKASDQLKG LSGERWQTQV FLTFGYGPIF
PSMSIFIASR KQGFVNDDEG NYRIDGLRHK FHNGVYILPE KVLLEFEQGQ WTSPMKGLLA
AYVYFSSPEL DNEELFRNVT QDIPILLGQD TPDVQALQIM AAQYYREPIP PISLSAPCMF
LAGIRAIIRA SIKAPDVIVD DSLLEDITDK LYNDMVWTSY QPAPIPEPIL ESMAAPQSEV
TSSIFSVVEK IIGNEKSPEE IGERLLKSQT VSTLLYYIDK LDHELDVNDL ATRLQIPPNV
VRKTVQHILN FSESIKDAES KPEQFTLRNI NKLKNIQ
|
|---|
| |