| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8975 |
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| Symbol | |
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| ID | 8340368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 10386686 |
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| End bp | 10390846 |
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| Gene Length | 4161 bp |
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| Protein Length | 1386 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644962065 |
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| Product | TrwC relaxase |
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| Protein accession | YP_003119629 |
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| Protein GI | 256398065 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.582517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATGC ACAAGCTCAC CGCCGGAGAC GGCTACACCT ACCTCACTCG GCACATCGCC
GGGGGCGACG TCGACCGCGT TCGAGGGCAG GACGCGGCGG ACTACTACAC CGCCAAGGGC
AACCCTCCGG GGATGTGGGT CGGCCGCGGA GCACCGCTCC TGAACGTCGC CGGCCAGCAG
GTCACCGAGG ACCAAATGCG GCACGTCTTC GGTTCCGGGA TGCACCCCGA CGCCGACCGG
ATCATCGCCG ATTACCTCGA TGAGCATCTG CGCGCCGACA TGACCGATCG GCAGCTCGCA
AAGGTCCGCG CCGACGCCAT CAAGGCCGCG ACGCTCGGGA CAGCGTTCCC GGCCTATGAG
CCGCTGGCCC GGTTCGACTC CCGCGTCACC GAACGGCTGG AGCAGATCCG CGAGACCACC
GGCCGGGCCC CTACCGAGGC CGAGATCAAG AAGATCCACA CCGAGGAGTC ACGGCGAGCT
CGCGCCGCCG TTGCGGGTTT CGACCTCGTG TTCGCGCCGG TCAAAAGCGC CGCGCTGGTG
TGGGCATTAG ACGAGCGGCC CGAGGTCCGA GCCGCGGTGC GCGAGGCGCA CGAGGCTGCC
CGGGACGCCG CGTTGGAGAT CCTGGAGACC CATGCCGCCT ACACCCGCAC CGGCCGCGGC
GGCATCGCGC AGATCGAGAC CCGGGGCTTG GTCGCCGCCC GGTTCGACCA CTTCGACTCC
CGCGCCGGCG ACCCGAACCT GCACACCCAC GTCGCGATCT CCTCCAAGGT GCAGGGTGTC
GACGGCATCT GGCGCTCGCT CGATGCTCGC GCGCTCTACA AGATGACGGT AGCGGTCAGC
GAGTTCTACA ACACCCGCTT CGAGACCGAG CTGACGACGC GGACCGGAGT GTCCTGGACT
GAGCGTCCGG ACACCACCGG CAAGCGGGAA CCGGTGCGCG AGATCGCCGG GATCGACCCG
AAGATGGTCG CGCACTTCTC CTCCCGTCGG ACTGAGATCG AGGCGCGATA CGAGCAGCTG
CTGCGCGGCT TCCGCCGCGA GCACGGATAC GACCCGTCCC GTGCGGTCTG CCACGACCTT
GCCCGGCAAG CGAATCTGGA GACCCGCGAG GGTAAGAAGG CGCCGCGTTC TCTGGCCGAG
ATGCGGGAGG ACTGGAGGGT CTCGCTCACC GACACCTTCG GGCGCAAAGC GGTCCGCGAC
CTGATGGCCG CGGTCCCGGG AACCGCCGCA GAGCAGGCCG CGAAGAAGGC CGATCCGGTC
GACGTCGACG CGATCGCGGC GGCCGTCGTG GACCGTGTCG GACAGAACCG CTCGACCTGG
ACGGTGTGGA ACCTTCGCGC CGAAGCCGAG CGCGCGGCTC GGATCGAGCA CGGCGTCTCC
ACCCCTGCCG AGCACCAAGA GCTGGTCTCC GCGATCGTCG CCGCTGCCGT ATCTCCGGCG
CACTCGATCC GAGTCGATGC TCCGGCGCTG CTGGACGAGC CGGCCTCGCT GCGCCGCGCC
GACAGGGAGT CTGTGTTCAC CGAGCACGGC GCCGCGAAGT TCACCTCCGC GGCGATCCTG
GCCGCCGAAA CCCGGCTGGT CGAAGCCGCC ACGACGCGCA CCGCCTTCGG CGCTACCGCC
GCCCGGGTCG GCGCGGTGCT GGACGGATTC GAGGCCCGAT CCGGCGTCCG GCTGGACGCC
GGCCAGCACC ACATGGCCAC GGCCTTCGCC GTCGACGACC GCCTTGTGGT CGCCGGAATC
GGTCCGGCGG GCTCGGGCAA GACGACCGCG ATGCGCGCTT ACGCCGAGGC CGTCGCCGCC
TCCGGACAGC GCCTTATACC CCTGGCCACC TCGTCGGCAG CGGCCGATGT CCTCGCCCGC
GACCTGGGCG CCAAGGCCGA GAACCTGCAC AAGTTCCTGC ACGAGTACTC CGACGCGCCG
ACCGCCGGCG CGTCCAAGGC GCTGTGGAAC GGGACCGGCA TTCCGGCTTG GGCCCGCGGG
TTCGCGCTGC GTCCCGGCGA CGTCGTCCTG GTCGACGAAG CGGGCATGGC CGGCACGTTC
AACCTTGACC GCCTCGTCCA GATCGCCGCG CACCGCGGAG CTGTCGTGCG GCTGCTGGGC
GACTACCGGC AGCTCGGCGC GGTCGAATCC GGAGGCGCGC TGCGGCTGAT CGCCAACCAG
GCCGGAGCGG TCGAGTTGAG CACGCTGCAC CGCTTCAACA ACCCGCGCGA GGCCGAGGCC
ACCCTCAAGG TGCGCGTCGG CGACAGCTCC GCACTCGACT TCTACGCCGA CGCCGGGCGC
ATCCGCTCCG GCTCCGCTCA AGGCATGATC GAAGCCGCCT ACGCCGGGTG GAAGACAGAC
ATGCTCGCCG GCAAGAAGAC CATCATGGCC GCGGCCACCA CCGCCGACGT CACCGCGCTG
TCCGCACAGG CACGACTCGA CCGTATCGAG GCCGGCCACG TCGAAGCCGA CGGCGCACGG
CTGCGAGACG GGAACCTCGC TGGCCGCGGA GACTGGATCG TCACCCGCGA CAACGACCGC
AAGAACAAGG TGTCGCGCGG CCGGGACTGG GTGAAGAACG GCGACGCCTG GACCGTCACT
AAACGCCACC GCGACGGATC ACTGACCGTC AAGAACATCG AGCACCAGGG CACCGTCCGG
CTCTCGGCAG AGTACGTCTC GGCCCACGTT GAGCTGCTGT ATGCGACCAC GACCAACCGC
GCCCAGGGCT CCACGGTGGA CACCGCCCAC CCGCTCATCA CCGCCGAGAT GAGCCGCGAG
AACCTGTACG TGATCCTCTC CCGCGCCCAA GAACGGACGT CGCTCTACGT CGAGACCCAC
GAACTGCTCC CGTTCGACGA AGACGATCGC TTGGACCGGG TGAAGAACGA CCCGCGCCAG
TTCGCCGCAC GCGAAGTCCT CACCGCCATC CTCAACCGCG AGGGCAACGA GATCTCTGCG
ACCGAGGCCA TCGCCGCATC CCAGCAGGCC GCCGGATCTT TGGCGACCAT CGCCCCGCGC
TTCCAGCACG CCCTTGAGAC CGCCGTCCGG CCCGCCTACA AGGAACTCGT CTACAAGACG
TTCACTGTCG ACGACGGCAC CGAGACCGGC GACACCTCGA TCCCCGACGC CATCGCCACC
GGCCCCGGCT ACGCCAAGCT GCGCCGCACC CTCCTGGCCA GCGACCAGGC CGGCCACAGC
CCCGCCGCGT TGCTCGCCCG AGCCGCCAAC GACATCGGGA TCACCGACGC CGACAGCCTG
TCCGAACAGC CCGCCGCGGA CCTCGCGCGC CGGATCAACA CGCTGCTCGA TCTCCGCCAC
ACCGCCGCTC CCGAGCAGGA CCGGCGGCCG GCCAGGCTTC CCGCCTGGTA CTCGATTCCG
ACTGCCGCGG ACGTCTCCGC CGCCGCCGAC ATCCCGCCCT ACCTGCGTCA CGCCCAGGAC
GTGATCGCCA GCCGCGTCGA CCAACTCGCG GACATCGCGC TTGCCGAGCG GCCCGCATGG
CTCACCGCGC TCGGACCGGT CCCCGACGAC GAACATGCCG TGACCGACTG GCGTCGGCAT
GTCGCGGCCG TCGCGGCGTA CCGGGACCAG CACCAGATCA CGTCCGACGA TCCGCGGCAG
GTTCTCGGCT CGCATTCGGA CGCCGACGAC GTTTCTGGAA CGCCATACCG CCACGCGTTG
CAAGCCGTCC TTGCAGCACG CGACATCAAC CACCTTGATG ACCACTCTGA CCCTCGTGAG
ATCTACCGCA CCCTGCCGCA AGGTGCACGG CAGAGAGTCG ATCTCACGCT CACCGATTCA
CTCGGGGCCC TGTTCCTTGT TGCCGGGGCG TCCGCCCAAG AGCGGCCGGC CTTGCTCCCC
GAGCACGTCG AGCACCTGCG GCTCGCGCTA CTCGCACACG GGCACTTGGG GCAGCGCGAG
CAGAGTCAGG CCGACGATGG AACGCCGTCG CCCCGGCCAG TGGAGATGAG CCTCGCCGAC
CGCCGCCGAG CAACGCGCGA CGCCGAACGG GCGGCTCGGC GTGAACGAGT CCTCAGCGGT
CAAGGTCCGG ATCGAACATC CTCGCGCCAG CAGCGACGGG GGCAGCCGGT CACCAAGCGC
TTGACTGAGC AACAGGAGGC ACCGCGCCTG ATTGAGCAGC CTCAGCAGGT GCAGCAACCG
GGCCGACAGA TCGGGATGTA A
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| Protein sequence | MTMHKLTAGD GYTYLTRHIA GGDVDRVRGQ DAADYYTAKG NPPGMWVGRG APLLNVAGQQ
VTEDQMRHVF GSGMHPDADR IIADYLDEHL RADMTDRQLA KVRADAIKAA TLGTAFPAYE
PLARFDSRVT ERLEQIRETT GRAPTEAEIK KIHTEESRRA RAAVAGFDLV FAPVKSAALV
WALDERPEVR AAVREAHEAA RDAALEILET HAAYTRTGRG GIAQIETRGL VAARFDHFDS
RAGDPNLHTH VAISSKVQGV DGIWRSLDAR ALYKMTVAVS EFYNTRFETE LTTRTGVSWT
ERPDTTGKRE PVREIAGIDP KMVAHFSSRR TEIEARYEQL LRGFRREHGY DPSRAVCHDL
ARQANLETRE GKKAPRSLAE MREDWRVSLT DTFGRKAVRD LMAAVPGTAA EQAAKKADPV
DVDAIAAAVV DRVGQNRSTW TVWNLRAEAE RAARIEHGVS TPAEHQELVS AIVAAAVSPA
HSIRVDAPAL LDEPASLRRA DRESVFTEHG AAKFTSAAIL AAETRLVEAA TTRTAFGATA
ARVGAVLDGF EARSGVRLDA GQHHMATAFA VDDRLVVAGI GPAGSGKTTA MRAYAEAVAA
SGQRLIPLAT SSAAADVLAR DLGAKAENLH KFLHEYSDAP TAGASKALWN GTGIPAWARG
FALRPGDVVL VDEAGMAGTF NLDRLVQIAA HRGAVVRLLG DYRQLGAVES GGALRLIANQ
AGAVELSTLH RFNNPREAEA TLKVRVGDSS ALDFYADAGR IRSGSAQGMI EAAYAGWKTD
MLAGKKTIMA AATTADVTAL SAQARLDRIE AGHVEADGAR LRDGNLAGRG DWIVTRDNDR
KNKVSRGRDW VKNGDAWTVT KRHRDGSLTV KNIEHQGTVR LSAEYVSAHV ELLYATTTNR
AQGSTVDTAH PLITAEMSRE NLYVILSRAQ ERTSLYVETH ELLPFDEDDR LDRVKNDPRQ
FAAREVLTAI LNREGNEISA TEAIAASQQA AGSLATIAPR FQHALETAVR PAYKELVYKT
FTVDDGTETG DTSIPDAIAT GPGYAKLRRT LLASDQAGHS PAALLARAAN DIGITDADSL
SEQPAADLAR RINTLLDLRH TAAPEQDRRP ARLPAWYSIP TAADVSAAAD IPPYLRHAQD
VIASRVDQLA DIALAERPAW LTALGPVPDD EHAVTDWRRH VAAVAAYRDQ HQITSDDPRQ
VLGSHSDADD VSGTPYRHAL QAVLAARDIN HLDDHSDPRE IYRTLPQGAR QRVDLTLTDS
LGALFLVAGA SAQERPALLP EHVEHLRLAL LAHGHLGQRE QSQADDGTPS PRPVEMSLAD
RRRATRDAER AARRERVLSG QGPDRTSSRQ QRRGQPVTKR LTEQQEAPRL IEQPQQVQQP
GRQIGM
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