| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8902 |
|---|
| Symbol | |
|---|
| ID | 8340295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 10312587 |
|---|
| End bp | 10314065 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644961992 |
|---|
| Product | transcriptional regulator, GntR family with aminotransferase domain |
|---|
| Protein accession | YP_003119556 |
|---|
| Protein GI | 256397992 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAT ATTGGTCCAC TTTGGATGTC GACCTGCACC TCGCGGTCGA CCCGGCTTCC
GGTCGCCGGG TCGGGCTGGA GCAGGCGCTG CGCGAGGCGA TCCGGGACGG CCGGCTGGCC
GCCGGGACCC GGCTGCCCTC GACCCGGACG CTGGCAGCGG AGCTCGGGCT GGCGCGCGGG
ACGGTGTCCG CGGCGTATGA CCAGCTGGTC GCCGAGGGGC ATCTGGTCGC GGTGCGCGGT
TCGGGGACGC ATGTCGCCGA CCTGGGATCC CGGGTCGGCG CACCGCTCCG GCCCTCCGCG
GCGGGAGCTG CCTCCGCAGC CGAACCAGCA GGCAGCGAAC GTCCCTGGAC TCAACCTCTC
GGCCTCAACC TGCGGCCGGG CTCCCCGGAT CTGTCCTTCT TCCCCCGGGC CGCCTGGCTC
CGCGCCGCTC GGCGAGCGCT GAACGCCGCT CCGAACAACG CCTTCGGCTA CGGCGATCCG
CGCGGCCGGA TCGAGCTGCG GCAGGCGCTG GCCGAGTACC TGGGCCGGGC GCGGGGCGTG
CGCACCGACC CGGAGCGGAT CGTGATCGTC TCGGGGGCGG TGCAAGGGCT GGCTCTGCTG
GCGCAGGTGC TCGGCGGCGC CGTGGCCATG GAGAATCCGT ACATACCGCT GTTCCACGAG
GTGGTGCGGA CCCACGGCGC GGAGGTCGTG CCGCTCCCCG TGGACGAGGA CGGCGCCCGC
GTCGATCTGC TCTCCCGGCG CGCCTTCGAC GGCGTCGACA CCGTGGTGGT CACCCCCAGC
CACCAGTATC CGATCGGCTC GACGCTGCAC CCGGCGCGCC GCCAGGCGCT GGTGGAGTGG
GCTCGCGAGG GCCGCCGCCT GGTCGTCGAG GACGACTACG ACGGCGAGTT CCGCTACGAC
CGGCAGCCGG TCGGCGCGCT GCAGGGCATG GCGCCGGACC GCACGGTCTA TCTCGGCACG
GCCTCGAAGA CCCTCGGTCC CGGAATCCGC CTGGCATGGA TGGCGCTGCC CGAACACCTG
GTCGGACCGC TCACCGAGGC CAAGCGGCAC GCCGACCACC AGACCGAGTC GCTGGGCCAG
CTGACCCTCG CGGAGTTCAT CGCCTCCCAC GACTACGACC GGCAGGTCCG CGCCGCGCGC
CTGCGCTACC GGCGGCGCCG CGACCTGCTC GCCGAGCGGC TGCACCCCCG GGCCGGACGG
CCGGCGGCCG GCTTCGCGCT CGGCGGCATC GCGGCCGGCC TGCACGCGCT GGTCCGGCTG
GAACCGGCGG GGATGACCGA GGCCGAGGTG CTCCGGCGCG CCGCGGAGTC CGATCTGGAC
CTGGAAGGAC TCGGCGACCT CTGGCACACG TCGCCGACGA ACACCCATGC GAGCTCCGCC
GCACGTCCGC AGGGCATCGT GGTGGGTTTC GGCAGTCCCA CGGAAGCGGC TTACCCGCGG
GCGCTGGACG CGTTGGTGCG GACACTTTCG TGGAGATGA
|
|---|
| Protein sequence | MAEYWSTLDV DLHLAVDPAS GRRVGLEQAL REAIRDGRLA AGTRLPSTRT LAAELGLARG
TVSAAYDQLV AEGHLVAVRG SGTHVADLGS RVGAPLRPSA AGAASAAEPA GSERPWTQPL
GLNLRPGSPD LSFFPRAAWL RAARRALNAA PNNAFGYGDP RGRIELRQAL AEYLGRARGV
RTDPERIVIV SGAVQGLALL AQVLGGAVAM ENPYIPLFHE VVRTHGAEVV PLPVDEDGAR
VDLLSRRAFD GVDTVVVTPS HQYPIGSTLH PARRQALVEW AREGRRLVVE DDYDGEFRYD
RQPVGALQGM APDRTVYLGT ASKTLGPGIR LAWMALPEHL VGPLTEAKRH ADHQTESLGQ
LTLAEFIASH DYDRQVRAAR LRYRRRRDLL AERLHPRAGR PAAGFALGGI AAGLHALVRL
EPAGMTEAEV LRRAAESDLD LEGLGDLWHT SPTNTHASSA ARPQGIVVGF GSPTEAAYPR
ALDALVRTLS WR
|
|---|
| |