Gene Caci_8885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8885 
Symbol 
ID8340278 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp10294315 
End bp10295160 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content71% 
IMG OID644961975 
ProductABC transporter related 
Protein accessionYP_003119539 
Protein GI256397975 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAGT TCGCCATCCA GACCGAGAGT CTCGGCAAGC GCTACCGGAA ACTGTGGGCG 
CTGAAGGACT TCAGCGTCTC GCTGCCCGCC AACAAGGTCA TCGCACTGGT CGGCGCGAAC
GGCGCCGGCA AGTCCACGCT GATGTCCATC GCCGCCGGGA TCCTGCCGGC CAGCGAGGGC
GAGCTCCGGG TCAACGGCCG CGTGGTGCTG CTGTCCCAGG AGAAGCCGCT CTACCGCTCG
TTCACCGTCG CCGACATGCT CGCCTTCGGC AGGCATCTGA ACCGGGTCTG GGACCAGGAG
CGCGCGCTGA ACTGGCTGGG CCGCTTCGAC ATCCCGCTGA ACCGGCCCTG CGGCAAGCTC
TCCGGCGGCC AGCAGACGCA GGTCGCGATG GCCGTGGCGC TCGGCGCGCG GCCCTCGGTC
CTGCTGCTCG ACGAGCCGCT GGCCAACCTG GACCCGCTGG CCCGCCGCGA GGTCACCGGC
GAACTGCTCG CCGAGGTGGC CGACAGCGAC ATGACGGTCG TGCTGTCCAC CCATGTGGTG
GCCGAGCTGG CCGGCGTCGG CGACTACCTG CTGCTGCTCG GGCAGGGCCG CGGCAAGCTC
GACGGCGACG TCGAGGAGCT GCTGGCCCAG CACGCGCGGC TGACCGGCCC GCGCGCCGAC
GCCCCGCCGG TCGAGGGCGA GATCGTGCAG GCGCAGCACA CCGAACGGCA GTCGACGTTC
GTGATCCGCA CGCTGCTCGG CGCGGACACT CCGCTGGCCG AGCCGTGGAA GGCGCAGCCG
CTGACTCTGG AGGACCTGGT GCTCGCCTAC CTGAAGCCGC ATCGCAGTCC CGGGGAGGAG
CTGTGA
 
Protein sequence
MSEFAIQTES LGKRYRKLWA LKDFSVSLPA NKVIALVGAN GAGKSTLMSI AAGILPASEG 
ELRVNGRVVL LSQEKPLYRS FTVADMLAFG RHLNRVWDQE RALNWLGRFD IPLNRPCGKL
SGGQQTQVAM AVALGARPSV LLLDEPLANL DPLARREVTG ELLAEVADSD MTVVLSTHVV
AELAGVGDYL LLLGQGRGKL DGDVEELLAQ HARLTGPRAD APPVEGEIVQ AQHTERQSTF
VIRTLLGADT PLAEPWKAQP LTLEDLVLAY LKPHRSPGEE L