Gene Caci_8706 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8706 
Symbol 
ID8340088 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp10090049 
End bp10092271 
Gene Length2223 bp 
Protein Length740 aa 
Translation table11 
GC content69% 
IMG OID644961787 
Producthelicase, RecD/TraA family 
Protein accessionYP_003119362 
Protein GI256397798 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.671857 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.279794 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTGAGT CAGAGCTGGC TGGTGGTGTC GAGGTCGAGG CTGCTGTGGA GCGGCTGATC 
TTCGTTCGGG CGGACGAGTA CACCGTGGCG CGGCTGGCCT CTGATGAGCA CGGGAAGTTC
ACGGCTGCCG GTGCGGCGCT GGCTGGGGTG CAGCCTGGTT CGGTCGTGCT GCTGGCCGGC
CGGTGGGTTC AGCACGCTCG GTTTGGGTCG CAGTTGGCAG TGCGCTCGTG TGAATGCGTG
CTGCCGTCAC ATATTCGCGG GATCCGGATG TACCTGGGTT CTGGCTTGAT CCGGGGGATC
GGGCCGGGTC TGGCCACTGC GATCGTCGAG CACTTCGGTG CGGAGACGCT GGCGGTCATC
GATGCCGAGC CGGAGCGGCT GACCGAGGTG ACCGGGATCG GCGCGGTGCG CAAGGACAAG
ATCGTGGCTT CCTGGATCGG GCAGAAGATG ATCCGGGATC TGATGGTCGT TCTGCAGGGG
TTCGGGATTT CGCCGCTGAT GGCCGCGAAG ATCTATACCG AGTTCGGGTC GGATTCGATG
GCTGTGGTGC GCAAGGATCC GTACTTGCTC ATCGAGAAGG TGCGCGGCAT TGGCTTCGCT
ATCGCGGACA AGATCGCCTT GGCGTCCGGG GTTGCGGAGC AGGATCCGAA ACGGCTGCGG
GCCGCGTTGA GCGACCGGTT GGAGGCCGCT CGGCGTGACG GCGACTGCTA TATGAACCGC
ACGCATCTGC TCGTGGACGC GGCGCGGCTG GTGGGGCAGG ATCGCGAGCT CGTCCGTATC
GAGCTGGAGC AGTTGGCCGC GGATCGGGCG GTGATACTGG AGCCTGATCC GAACCCCGGG
CTGGAGGACG TCGGTCCGCC CGCGACGGTC GTGTTCGCCA AGACGCTGCA CAACACCGAG
CGCGCCCTCG CCACGGCGGT CACCAGGGTG CTGCACGCCG ATTCGGACGT CCCGGTCGCG
GCCCGGCGAC GTGCGGAGAC CCTCGACGCC GACCACCCCG ACCTGCACGA GGGGCAGCGG
GCAGCGGTGG GGATGGCGCT GACGCACACG GTGTCGGTGC TCACCGGCGG TCCGGGGTGC
GGCAAGAGCC ACACGGTGAA GACCATCGCG CAGATCGTGA AGGCTTGCGG CGGGAGGGTG
ACGCTGGCGG CGCCCACCGG CAAGGCCGCC AAGCGGCTCG CCGAGCTGAC CGGGATGCGG
GCGATGACGG TCCACCGGCT GGTGGCCGAT CTCCCCGATG CCGATCCGGA CGCGTTGTTC
GAGGACAGTC CGCTGATGGC CGATCTGATC GTCGTCGACG AGGCGTCCAT GCTGGACGTG
TTCCTCGGCC TCAAGCTCGC CCGCCAGGTT CCGCCCGGGA CGCACCTGCT CCTGGTCGGG
GACGTGGACC AGCTGCCGTC CATCGGGCCT GGCAGCGTCC TGAAAGACCT ACTGCGGGTG
CCGGACGTCG CGCGCACCGA GCTGACCCAC GTGTTCCGCC AAGGCGAAGG CTCCTCCATC
ACCACCAACG CCCACCTGAT CCGCGCCGGA CGGATGCCGA ACCCGCGCAC CAGCGAGTTC
TGGTTCGACG AGGTCGAGGA CCCCGCGCAG GTGGCCGAGC GCATCCTGGA GATCGCCACC
GGCCGCATCC CGGCGTCCCA CGGGGTCCCG CCGTCCGACG TCCAGGTCCT GGCCGCGACC
CGCCGCGGCG CGACCGGCAC CGTCGAGCTC GGCCGCCGCC TCCAGGAACG CCTCAACCCC
GCCGACCCGG ACAAGGCCGA GCACTGGGCC GGCACATCGG TGTTCCGTAT CGGCGACAAG
GTGATGCCGA TCCGCAACGA CCCCAACAAG GGCAGCGCCG GCATCTTCAA CGGCACCACC
GCCGTCGTCT CCGACCTCGA CCCCCAGTCC CGCACCGTCC AACTCCGCAC CGACGACGGC
GACATCGCGG TCTACGACTT CGACGAACTC GACGACCTCC TCCACGCCTA CGCCATCAGC
GTCCACCGCT CCCAAGGCAG CGAGTACCCC TACGTCGTGG CCCCCCTCAC CACCGAGACC
GGCCCGCTGA TGCTCTACCG CAACCTCCTC TACACCCTCG TCACCCGCGC CCAGAAGCTC
GTCGTCCTCG TGGGCCAACG CCGCGCCCTC GAGATCGCCG TTCACAACGC CGGCCGCGCC
CGCAACACGG CCTTGGCGCA GCGGCTCCAG GCGGTGCTGG ACGGGACTAG CGCTTCGCGG
TGA
 
Protein sequence
MSESELAGGV EVEAAVERLI FVRADEYTVA RLASDEHGKF TAAGAALAGV QPGSVVLLAG 
RWVQHARFGS QLAVRSCECV LPSHIRGIRM YLGSGLIRGI GPGLATAIVE HFGAETLAVI
DAEPERLTEV TGIGAVRKDK IVASWIGQKM IRDLMVVLQG FGISPLMAAK IYTEFGSDSM
AVVRKDPYLL IEKVRGIGFA IADKIALASG VAEQDPKRLR AALSDRLEAA RRDGDCYMNR
THLLVDAARL VGQDRELVRI ELEQLAADRA VILEPDPNPG LEDVGPPATV VFAKTLHNTE
RALATAVTRV LHADSDVPVA ARRRAETLDA DHPDLHEGQR AAVGMALTHT VSVLTGGPGC
GKSHTVKTIA QIVKACGGRV TLAAPTGKAA KRLAELTGMR AMTVHRLVAD LPDADPDALF
EDSPLMADLI VVDEASMLDV FLGLKLARQV PPGTHLLLVG DVDQLPSIGP GSVLKDLLRV
PDVARTELTH VFRQGEGSSI TTNAHLIRAG RMPNPRTSEF WFDEVEDPAQ VAERILEIAT
GRIPASHGVP PSDVQVLAAT RRGATGTVEL GRRLQERLNP ADPDKAEHWA GTSVFRIGDK
VMPIRNDPNK GSAGIFNGTT AVVSDLDPQS RTVQLRTDDG DIAVYDFDEL DDLLHAYAIS
VHRSQGSEYP YVVAPLTTET GPLMLYRNLL YTLVTRAQKL VVLVGQRRAL EIAVHNAGRA
RNTALAQRLQ AVLDGTSASR