Gene Caci_8702 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8702 
Symbol 
ID8340084 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp10085900 
End bp10086844 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content71% 
IMG OID644961783 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003119358 
Protein GI256397794 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.193312 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCGG ACTTCAACGC GATCATGAGC GGGCGCCGCC AGCTGATCAA CCTCGGCTAT 
CGGCTCCTCG GCTCCCTCGC CGACGCCGAA GACGTCGTGC AGGAGACCTA TGCCCGTTGG
TACGCCATGT CCGCCGAGGA ACAGCAGGCA ATCGAGGCGC CCGGCGCCTG GCTGATGACC
GTCGCCAGCC GGATCTGCCT GAATCAGCTC GCCTCAGCAC GGGTCCGGCG GGAGACGTAC
GTCGGGGAAT GGATCCCCGA GCCGCTGCCC GAACCCACGG AATGGATCGC GGGGCGCACC
GGCACAGACC GTGCCGACCC GGCCGACCGG GTCACCCTCG ACGAGTCCGT GACCATGGCG
TTCCTGGTCG TCCTGGACGC GCTGACCCCG GCCGAGCGCG TCGCGTTCGT CCTCCACGAC
GTCTACGGCT ACCCCTTCGG GGAGGTCGCC GAGATCGTCG GCCGCACCCC GGCGGCGTGC
CGCCAACTGG CATCCTCAGC CCGCCGCCGG ATCCGTAGCG CGCAGCCGCC GGCCAGCCGC
AGCCCGAACC CGAGCCCGAA CCCAAGCCAG AGCGCCGGGC AGGCCGAGAT CGTGCGGGAC
TTCAAGGCGG CGTGGGCGGC CCAGGACATC CAGGCCCTGA TCGGCCTGCT CGACCCGGAC
GCCACCGCGA CCGCCGACGG CGGCGGCCTG GTCACGACCC ATGTGGAGCC GATCGTGGGC
GGCGTTGAGA TCGCCCGCGC CTACGCCGAA CTCGCCGGCG TGGTACACGG GCACACGACG
TTCGTGGAGT GCAGCGTCAA CGGACTGCCC GGACTCGCCG CGTTGCGGGA AGGCCGCACG
GTGAGCGTCT TCGCGTTCGA GATCGCGGGG GAGCGGATCA GGCGCATCTG GGCGGTCGCG
AACCCCGAGA AGATCCGTCC CTGGCAGGTC AGCCTAGGAG ACTAG
 
Protein sequence
MNADFNAIMS GRRQLINLGY RLLGSLADAE DVVQETYARW YAMSAEEQQA IEAPGAWLMT 
VASRICLNQL ASARVRRETY VGEWIPEPLP EPTEWIAGRT GTDRADPADR VTLDESVTMA
FLVVLDALTP AERVAFVLHD VYGYPFGEVA EIVGRTPAAC RQLASSARRR IRSAQPPASR
SPNPSPNPSQ SAGQAEIVRD FKAAWAAQDI QALIGLLDPD ATATADGGGL VTTHVEPIVG
GVEIARAYAE LAGVVHGHTT FVECSVNGLP GLAALREGRT VSVFAFEIAG ERIRRIWAVA
NPEKIRPWQV SLGD