Gene Caci_8620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8620 
Symbol 
ID8340002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp9986754 
End bp9990473 
Gene Length3720 bp 
Protein Length1239 aa 
Translation table11 
GC content57% 
IMG OID644961704 
Productputative signal transduction protein with Nacht domain 
Protein accessionYP_003119279 
Protein GI256397715 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00545608 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.590106 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCGCA GCTCGCCAAC ATCGGGAGTC ACACAGTTGG TGCCGAAGCC AAAGGGTCAC 
ACGACAGAGT GCAAGCCCGA TAGGAAAAGC CGCCCTGGTT CAATCGGCGG TCGAGCCAAC
GAGGCCGGCA GCCTGCACCG AAGCGGTGTA GCCGCCTACC TTGCCGCGCA TGGCTTGGTA
GGCCGCGCCG TAGAGGAGGC TGGCTACCTG CCAGGAGGCC CGACGCCAGC AGCGGTTGAG
TTCGAAACTC ACGATGATGT GGACGACATC GCTTGCACTA TGACAGACGG CAGCAGGCTC
CTCATACAGG CCAAACGAGC CTGCGGCATC GATGATCAAT TCCGAAGTGC GGTCGCTCAA
TGGGTCACAC AAACTCCCAA ACTTCGTCGC AGCGACCGCG TCGCGCTGGC TGCTGCCGAG
ATAAGCGGGA ACCTAAGATT TCTGGGTCAG GCACTAGGCC GACATCGGAA ACAAATTTCA
GGACCGCATA CGTCTGACGA AAAGAAGGCA ATAGCCGACC TAGACAGGGC CTTCCCCGCC
GGAACCTCAC CAAGCTTGAG GTCCGCCGTC AGGTCCTGTG CGTACGTGCT AAAGCTAGAT
GTCTCGACAC ATCAGGATCC GCTTTTCAAG TTCGTTGCGA GTCTACTTGA GGGCGTCGTA
GTGCCCTCCG GTGAAGGCAC CATGGCCATC GAGGCGCTAC AACGAGCCTT CCAAGAGCAG
GCCGCCAGCG GGTCCGGAAG TGGGCTCGAC GATTGGCTAA GGACGTTAAG CCAGGCTGGC
ACTACCGTGT ATGCGGCCGC GGATGGCCCC GCCGGGCCAC GCCGGCAAGC AGAGAAGCAG
GCGTTGATCA CATATCAGAC CCACCTGCGT GGCCGGAAAG ATCAGCTTGA ATACTCTCTC
CTAGCCGAAG ACCTGCCACC CCTCAAGGTC GCCGATCTGG CGGCAACGTT CCAGGTACGA
GCAGTTATTG ATAATAGCCC AGTCAGGCAA ACTGATGAAC TTGTGAGCTT GACCAGGCAT
TGGACACGAA TGGTGTTGAC CGGACTTCCA GGGATGGGTA AGTCCACAGC GCTCGAGCAA
TTGGCAGCAT TGTGGAGCGT CAATGGGAGC CCCGTCCCTA TCCTCGTCCG CCTAGCAAGT
GTTGCGCGAC GTGTGCAGCG GTCGTCCGAT GTCACCGTGC CATTGCTGGT GGCTGAAGCC
GCGGGTGGCG TGTCAACGGA TGAGGTGGCT CCGCTTCGCA GGGCACTTGA GCAGGCCATC
GCGTCTGGGA CCGCAGTACT TCTTCTGGAC GGCCTCGACG AGACCGGCCC AAAGCGAGGC
CTAATTGCCG ATGGCCTGCT CTCAGCTATC GAAGGGCTGC CAGATTTAAC GGGCATCATC
ATCACTACCC GCCAGAGCGC AATTGGGGCA GCGAGGAAGA TCGGCCTGCC CGAGGCTCAA
CTAACCGAAC CTAAATGGCT GGCATCGACC CTTCATCAGC TACTGCACCA CGTCGCAGAT
CGCCGCATCC TCCCGAAAAA TAGGGATAGC TGGGTAGCGG AGCACATCGC CTGGCTCAAT
CAGGCCAAAA ACGATAGCAG CGAGATCTGG TCAGTGCCAA TGCTCGCGAC ACTCCTAACC
CTTCTTTCAG CCGAGAAGAG CGTCGAGTCG CTACCTCAAA GTCGTGCACA CCTTCTCGCA
GATGCCGTTC GAGATAGTGT TCGACGTTGG GAGAAAGCTC GCGAGTCCGG CACGTTAAGC
GAACCGTGGT CTCCACAGCT AACCGACGGC ATACTCATTG ACGGATACGC CATCATTGGC
CACAGAGTAA ATGCCAGCGG AGCGGCATCT ATTTTGACCA TCGAGAGAGA TATCGTGAGC
ATGCTCTCGA CTCAATGGGG TCGATCAGCG GGCGAAGCAA AACAGCTAGC GTCCGAAATA
TTGCGATTCT GGGACGACAA GATCGGCGTT TTCGTCACTC GCGAGGGAGA TCGACTTGAG
GCGCGAAGCC GGATCTTTGG CGAGATCGGA GACGCAATGT GGGTGGCAGA ACAGGAAACA
GCCACAAGTA TGAGCTGGAC TGCCAAAGCC ATCGCCGATA GCGAACGTCG CGACACTTTG
CTCCTCGCCG CCGGCCTATC CCCCGGGATC TTGAGGAATC TAATTGACCT TGCAAGAGGG
TCGCACGGTG ACACGCCGGA AGCAGATCGC GATCGAGCGC TACTTTGGTC TTCGGAAATC
GCTTTGTCAC GTAAGGGAAT CGACCACGAC CTTCTACTAA AACTGATTGA CGCACTCGCG
CTAGCAACAA GGAGGAAGTC TACAGAAGAC ACGCGGCTTC CTAAAACCTA CACCGCATCC
ATTACACCAA GTTTTACCGC AACCTTTCGG CGTGATAACC GTCGTTGGCG CCTAGTTCGC
GCGCTTGCGT CGCTGGCACT TCCGTTCGAG CTACGCGAAC GCCGGGATAT ATCTATTTCA
GCGAACCTAC TGGAACCCGA GCAAGATCTG ATAGTAGACG CGATGACGTC GCTCTCCGAC
GCCCGCTACG ATGCGTCGAC CTCTCTTGAG CCAAAAGCGA TTGATGCGGT TCGGAAAGTG
CTGGACTCAA CCATTATTGA AAGGCAGGAT CCTGACGAAG CGACAAAGAG CGGTAACCCC
ATCCCTACGA AGAGGCCATG GGCTGGGCAG TCTGAAGTTG CAGAGTGGGC TATCCCCTTC
CTCTCGCAGC TACCCGAAAC GACACCTGAA GCCATCTACG AGGTTGCTTG GCATTCCTCA
GTTGGCCAAT ATGGTCGCGT TTCAAGCACC CTAAGAGAAA GAGGTCATAT CGACACCAAG
CCTCGCTGGT CGCCAATTGA CGTGTCACTA GAGGACATCT CATCCACGAT CTCACGATCC
AATATCAAGG TCTGGAAATC CATCGAGAGC GTGAGCGACG AGCGAACGCC GCTGACCCCC
GCCGAGCAAT GGCGCCTTCC AAGGCTATTC GCTTTCAGTG ACACCATAGG CTTCGGCGAA
AATACCGTGC CAGACTGCTA CGAACTTGAT AGAATCGACT CCGTAAAGCT AGCCCGCTGG
ACACGGGTAG TTGCTCGCAC CACGAACCTT GACCTTGTTG TGCTCGCCAC AGAGGCCGCG
CTAGTTCTCT CATGGAACGA AGAAGAACAG CAGGACCTAT TTAGGGCACT GTCGACCTCC
AGAACGCTCA AATCGCCTTC ACCTGACGTA ACCCGCCTAG AAGCTTCCGA CATCGACACA
CTGATTGAAT CGCTCTTGTA TCCTTCGAGG TGGGTCGCCC ATATCGCTAT GAATGTACTG
GCGGCGACGG GCGATTACGC GATTAGTCCT CGCATCGAAG AGTGTATACA TCTCATGGTC
GCAGAACGCC GCCACTACGC AACTACTCTA GTGTGTACAC TGAGCGATGA TCCAGCACAA
AAGATCGAAA CCTTTCTTGA CGAGACTGAC CCCGTCTGCC GGTCGGGAGC CGCTCTTGCG
CTAAGTACAC TTCCGCTCGA TGAACGAGTC ACAGATTTGG TTTATCGCGC CCTCAGCGAC
AGAGATATGT CGGTTAGGAT CGCGGCCGGT GCAGATCGCA GCATCGCCGA ACAGGCCGAG
TATTGGTCAT GCATTAACTG TGGAAATGTG ACGGAGGTTC CCAAGACAAG CTGCGCACAT
TGCACGCACG GTTTTCGCCC TGCGACCCCG CGAGTAGTAA TCGACTCTGG CGATGCATAA
 
Protein sequence
MRRSSPTSGV TQLVPKPKGH TTECKPDRKS RPGSIGGRAN EAGSLHRSGV AAYLAAHGLV 
GRAVEEAGYL PGGPTPAAVE FETHDDVDDI ACTMTDGSRL LIQAKRACGI DDQFRSAVAQ
WVTQTPKLRR SDRVALAAAE ISGNLRFLGQ ALGRHRKQIS GPHTSDEKKA IADLDRAFPA
GTSPSLRSAV RSCAYVLKLD VSTHQDPLFK FVASLLEGVV VPSGEGTMAI EALQRAFQEQ
AASGSGSGLD DWLRTLSQAG TTVYAAADGP AGPRRQAEKQ ALITYQTHLR GRKDQLEYSL
LAEDLPPLKV ADLAATFQVR AVIDNSPVRQ TDELVSLTRH WTRMVLTGLP GMGKSTALEQ
LAALWSVNGS PVPILVRLAS VARRVQRSSD VTVPLLVAEA AGGVSTDEVA PLRRALEQAI
ASGTAVLLLD GLDETGPKRG LIADGLLSAI EGLPDLTGII ITTRQSAIGA ARKIGLPEAQ
LTEPKWLAST LHQLLHHVAD RRILPKNRDS WVAEHIAWLN QAKNDSSEIW SVPMLATLLT
LLSAEKSVES LPQSRAHLLA DAVRDSVRRW EKARESGTLS EPWSPQLTDG ILIDGYAIIG
HRVNASGAAS ILTIERDIVS MLSTQWGRSA GEAKQLASEI LRFWDDKIGV FVTREGDRLE
ARSRIFGEIG DAMWVAEQET ATSMSWTAKA IADSERRDTL LLAAGLSPGI LRNLIDLARG
SHGDTPEADR DRALLWSSEI ALSRKGIDHD LLLKLIDALA LATRRKSTED TRLPKTYTAS
ITPSFTATFR RDNRRWRLVR ALASLALPFE LRERRDISIS ANLLEPEQDL IVDAMTSLSD
ARYDASTSLE PKAIDAVRKV LDSTIIERQD PDEATKSGNP IPTKRPWAGQ SEVAEWAIPF
LSQLPETTPE AIYEVAWHSS VGQYGRVSST LRERGHIDTK PRWSPIDVSL EDISSTISRS
NIKVWKSIES VSDERTPLTP AEQWRLPRLF AFSDTIGFGE NTVPDCYELD RIDSVKLARW
TRVVARTTNL DLVVLATEAA LVLSWNEEEQ QDLFRALSTS RTLKSPSPDV TRLEASDIDT
LIESLLYPSR WVAHIAMNVL AATGDYAISP RIEECIHLMV AERRHYATTL VCTLSDDPAQ
KIETFLDETD PVCRSGAALA LSTLPLDERV TDLVYRALSD RDMSVRIAAG ADRSIAEQAE
YWSCINCGNV TEVPKTSCAH CTHGFRPATP RVVIDSGDA